Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-114P-201ENST00000384704 105 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXD3P31249 MIR708-201ENST00000390708 88 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD3P31249 AL080315.1-201ENST00000406055 466 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 RAP1BP3-201ENST00000407180 549 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AC138393.2-201ENST00000414742 246 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD3P31249 AL121601.2-201ENST00000438019 707 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC114495.1-201ENST00000441274 436 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC112653.1-201ENST00000443851 386 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 RAD23BP3-201ENST00000454157 1152 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 RPS20P24-201ENST00000457473 361 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 RN7SL41P-201ENST00000476144 297 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AC020890.1-201ENST00000491837 504 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AC023194.1-201ENST00000493084 308 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 OR5H5P-201ENST00000503164 928 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXD3P31249 IGLVIV-65-201ENST00000517313 360 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC022616.3-201ENST00000523940 148 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXD3P31249 MIR3146-201ENST00000580367 79 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD3P31249 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC012507.3-201ENST00000603556 477 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AP002360.3-201ENST00000607673 710 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 AC099669.2-201ENST00000616549 437 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AC040168.1-201ENST00000623594 991 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AC068724.3-201ENST00000625906 87 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 U3.53-201ENST00000628922 216 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HOXD3P31249 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD3P31249 AC006971.1-201ENST00000407916 4486 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 AL672167.1-204ENST00000641875 3017 ntBASIC3.58□□□□□ -1.84
HOXD3P31249 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD3P31249 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
HOXD3P31249 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 RN7SKP44-201ENST00000363602 316 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 RNU6-456P-201ENST00000384493 107 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 RNA5SP397-201ENST00000391323 118 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 RNU2-47P-201ENST00000410649 186 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 RNU2-8P-201ENST00000410727 190 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 ELOCP19-201ENST00000411919 318 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 RPL23AP30-201ENST00000432419 501 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC119618.1-201ENST00000434191 222 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC104651.2-201ENST00000447549 528 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AL645939.1-201ENST00000453429 797 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC011276.1-201ENST00000469688 323 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 RPL35P6-201ENST00000490024 372 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC007016.1-201ENST00000512110 244 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 HMGB1P19-201ENST00000517578 577 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD3P31249 OR5BC1P-201ENST00000529327 739 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD3P31249 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD3P31249 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXD3P31249 AL157687.1-201ENST00000554853 619 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC105129.1-201ENST00000560250 297 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD3P31249 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD3P31249 MIR3939-201ENST00000582614 106 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD3P31249 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD3P31249 AC068790.5-201ENST00000602741 355 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AL451044.1-201ENST00000604867 238 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 Z84480.1-201ENST00000605131 311 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 ARF4P1-201ENST00000605447 541 ntBASIC3.57□□□□□ -1.84
HOXD3P31249 AC008536.2-201ENST00000607284 349 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms