Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 CYP4F35P-202ENST00000636121 390 ntBASIC5.51□□□□□ -1.53
MSX1P28360 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
MSX1P28360 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSX1P28360 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
MSX1P28360 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.51□□□□□ -1.53
MSX1P28360 AC008758.3-201ENST00000507003 1829 ntBASIC5.51□□□□□ -1.53
MSX1P28360 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
MSX1P28360 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
MSX1P28360 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 RNA5SP273-201ENST00000362484 113 ntBASIC5.5□□□□□ -1.53
MSX1P28360 Y_RNA.84-201ENST00000363011 104 ntBASIC5.5□□□□□ -1.53
MSX1P28360 SNORD1C-201ENST00000363315 78 ntBASIC5.5□□□□□ -1.53
MSX1P28360 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.5□□□□□ -1.53
MSX1P28360 RNU6-378P-201ENST00000384324 107 ntBASIC5.5□□□□□ -1.53
MSX1P28360 RNU11-201ENST00000387069 134 ntBASIC5.5□□□□□ -1.53
MSX1P28360 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
MSX1P28360 RPL23AP17-201ENST00000401064 499 ntBASIC5.5□□□□□ -1.53
MSX1P28360 RNU6ATAC16P-201ENST00000408591 138 ntBASIC5.5□□□□□ -1.53
MSX1P28360 RNU6-121P-201ENST00000410525 99 ntBASIC5.5□□□□□ -1.53
MSX1P28360 RPL31P2-201ENST00000413849 377 ntBASIC5.5□□□□□ -1.53
MSX1P28360 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 AL596266.1-201ENST00000448132 400 ntBASIC5.5□□□□□ -1.53
MSX1P28360 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX1P28360 RN7SL177P-201ENST00000476596 299 ntBASIC5.5□□□□□ -1.53
MSX1P28360 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX1P28360 AC008945.1-201ENST00000505144 499 ntBASIC5.5□□□□□ -1.53
MSX1P28360 Y_RNA.667-201ENST00000516212 107 ntBASIC5.5□□□□□ -1.53
MSX1P28360 SNORA31.6-201ENST00000516241 130 ntBASIC5.5□□□□□ -1.53
MSX1P28360 AC034114.1-201ENST00000520293 285 ntBASIC5.5□□□□□ -1.53
MSX1P28360 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX1P28360 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.5□□□□□ -1.53
MSX1P28360 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX1P28360 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX1P28360 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX1P28360 AL360012.1-201ENST00000602813 131 ntBASIC5.5□□□□□ -1.53
MSX1P28360 AL160281.1-201ENST00000605307 311 ntBASIC5.5□□□□□ -1.53
MSX1P28360 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX1P28360 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX1P28360 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
MSX1P28360 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX1P28360 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 AC006484.1-201ENST00000435086 1884 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC068769.1-201ENST00000474767 2426 ntBASIC5.49□□□□□ -1.53
MSX1P28360 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 DDX10P1-201ENST00000448545 1933 ntBASIC5.49□□□□□ -1.53
MSX1P28360 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 DDX18P3-201ENST00000404856 2007 ntBASIC5.49□□□□□ -1.53
MSX1P28360 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX1P28360 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-1159P-201ENST00000362933 107 ntBASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-1303P-201ENST00000364841 107 ntBASIC5.49□□□□□ -1.53
MSX1P28360 Y_RNA.352-201ENST00000365439 102 ntBASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-48P-201ENST00000384161 107 ntBASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-790P-201ENST00000384479 105 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC096921.1-201ENST00000411661 375 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC092809.3-201ENST00000415453 231 ntBASIC5.49□□□□□ -1.53
MSX1P28360 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX1P28360 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX1P28360 AC005077.1-201ENST00000449226 375 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC110792.1-201ENST00000491826 472 ntBASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-677P-201ENST00000516914 101 ntBASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-1212P-201ENST00000517023 104 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC022868.1-201ENST00000517767 391 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC027308.1-201ENST00000517993 110 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX1P28360 AP006587.4-201ENST00000526053 529 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX1P28360 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX1P28360 MIR548AI-201ENST00000579940 88 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 AC012254.3-201ENST00000591183 2117 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC073410.2-201ENST00000603240 332 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC006363.1-201ENST00000603806 463 ntBASIC5.49□□□□□ -1.53
MSX1P28360 RNU6-85P-201ENST00000605989 107 ntBASIC5.49□□□□□ -1.53
MSX1P28360 DLEU2_2.2-201ENST00000615474 90 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms