Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIG1P18858 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIG1P18858 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIG1P18858 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG1P18858 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG1P18858 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.66□□□□□ -1.5
LIG1P18858 MTND5P16-201ENST00000460269 1703 ntBASIC5.66□□□□□ -1.5
LIG1P18858 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 SNURFL-201ENST00000309296 343 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC073343.1-201ENST00000328239 651 ntBASIC5.66□□□□□ -1.5
LIG1P18858 Y_RNA.100-201ENST00000363141 102 ntBASIC5.66□□□□□ -1.5
LIG1P18858 RNY4P16-201ENST00000364768 94 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AL356421.1-201ENST00000403255 413 ntBASIC5.66□□□□□ -1.5
LIG1P18858 RPL5P18-201ENST00000406671 891 ntBASIC5.66□□□□□ -1.5
LIG1P18858 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG1P18858 CHEK2P3-201ENST00000416118 248 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG1P18858 OR1AA1P-201ENST00000419597 916 ntBASIC5.66□□□□□ -1.5
LIG1P18858 MTCO2P27-201ENST00000420740 428 ntBASIC5.66□□□□□ -1.5
LIG1P18858 EIF4HP2-201ENST00000424380 563 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG1P18858 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG1P18858 AC073415.1-201ENST00000449240 153 ntBASIC5.66□□□□□ -1.5
LIG1P18858 MTND3P16-201ENST00000452205 344 ntBASIC5.66□□□□□ -1.5
LIG1P18858 TRBV26-201ENST00000456572 344 ntBASIC5.66□□□□□ -1.5
LIG1P18858 PPP1R2P5-201ENST00000457256 603 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC093267.1-201ENST00000489176 961 ntBASIC5.66□□□□□ -1.5
LIG1P18858 RPL23AP72-201ENST00000492447 435 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AK3P4-201ENST00000504283 583 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC010350.1-201ENST00000504908 231 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG1P18858 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.66□□□□□ -1.5
LIG1P18858 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG1P18858 AC026464.5-201ENST00000562497 722 ntBASIC5.66□□□□□ -1.5
LIG1P18858 MIR4458-201ENST00000578872 75 ntBASIC5.66□□□□□ -1.5
LIG1P18858 MIR3146-201ENST00000580367 79 ntBASIC5.66□□□□□ -1.5
LIG1P18858 NF1P5-201ENST00000588287 448 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC136443.5-201ENST00000603741 370 ntBASIC5.66□□□□□ -1.5
LIG1P18858 RNU6-89P-201ENST00000606519 100 ntBASIC5.66□□□□□ -1.5
LIG1P18858 MIR7155-201ENST00000615925 56 ntBASIC5.66□□□□□ -1.5
LIG1P18858 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG1P18858 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
LIG1P18858 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG1P18858 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIG1P18858 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG1P18858 AP000542.2-201ENST00000623199 6179 ntBASIC5.65□□□□□ -1.5
LIG1P18858 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIG1P18858 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG1P18858 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG1P18858 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG1P18858 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG1P18858 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG1P18858 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG1P18858 SNORA73.1-201ENST00000363107 205 ntBASIC5.65□□□□□ -1.5
LIG1P18858 Y_RNA.146-201ENST00000363549 102 ntBASIC5.65□□□□□ -1.5
LIG1P18858 Y_RNA.231-201ENST00000364358 102 ntBASIC5.65□□□□□ -1.5
LIG1P18858 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG1P18858 AL645927.1-201ENST00000396783 406 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AL592291.1-201ENST00000403830 352 ntBASIC5.65□□□□□ -1.5
LIG1P18858 RNU2-62P-201ENST00000410868 191 ntBASIC5.65□□□□□ -1.5
LIG1P18858 RPS15AP12-201ENST00000419498 388 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AL451054.2-201ENST00000420896 202 ntBASIC5.65□□□□□ -1.5
LIG1P18858 HSPE1P1-201ENST00000421494 318 ntBASIC5.65□□□□□ -1.5
LIG1P18858 BEND7P1-201ENST00000422058 457 ntBASIC5.65□□□□□ -1.5
LIG1P18858 Z82205.1-201ENST00000428456 297 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.65□□□□□ -1.5
LIG1P18858 ERLEC1P1-201ENST00000433806 578 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG1P18858 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.65□□□□□ -1.5
LIG1P18858 AC020890.1-201ENST00000491837 504 ntBASIC5.65□□□□□ -1.5
LIG1P18858 HSPD1P15-201ENST00000505573 1122 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AC105417.1-201ENST00000514691 285 ntBASIC5.65□□□□□ -1.5
LIG1P18858 RNA5SP464-201ENST00000516251 108 ntBASIC5.65□□□□□ -1.5
LIG1P18858 Y_RNA.711-201ENST00000516993 102 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC5.65□□□□□ -1.5
LIG1P18858 AP000907.2-201ENST00000530827 353 ntBASIC5.65□□□□□ -1.5
LIG1P18858 DYNLL1P4-201ENST00000549314 266 ntBASIC5.65□□□□□ -1.5
LIG1P18858 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.65□□□□□ -1.5
LIG1P18858 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.65□□□□□ -1.5
LIG1P18858 AL355836.1-201ENST00000555951 870 ntBASIC5.65□□□□□ -1.5
LIG1P18858 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.65□□□□□ -1.5
LIG1P18858 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.65□□□□□ -1.5
LIG1P18858 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.65□□□□□ -1.5
LIG1P18858 AP002799.1-201ENST00000623552 423 ntBASIC5.65□□□□□ -1.5
LIG1P18858 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG1P18858 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
LIG1P18858 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LIG1P18858 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
LIG1P18858 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIG1P18858 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.64□□□□□ -1.51
LIG1P18858 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIG1P18858 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.64□□□□□ -1.51
LIG1P18858 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms