Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 CCNG2P1-201ENST00000549521 1000 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AGGF1P5-201ENST00000567900 919 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 MIR4637-201ENST00000582405 84 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AC022146.1-201ENST00000595307 847 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 BNIP3P26-201ENST00000600827 554 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 BNIP3P38-201ENST00000601117 544 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 XIAPP1-201ENST00000603162 600 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AL450336.1-201ENST00000605180 586 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AC011816.2-201ENST00000607089 556 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 U3.45-201ENST00000607547 219 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 AL360181.4-201ENST00000621752 134 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 U6.101-201ENST00000637707 76 ntBASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ATG4BQ9Y4P1 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 RNU6-560P-201ENST00000364007 108 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 Y_RNA.465-201ENST00000384293 102 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 MIR7-3-201ENST00000384898 110 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AL450338.1-201ENST00000407987 512 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AL049610.1-201ENST00000423374 372 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 YME1L1P1-201ENST00000429435 297 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 RPL39P6-201ENST00000448289 150 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 CFTRP1-201ENST00000456646 183 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 snoU13.4-201ENST00000458916 104 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC026410.2-201ENST00000460281 156 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 MTND2P32-201ENST00000521584 1038 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC087481.2-201ENST00000565492 330 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 MIR3922-201ENST00000585192 84 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC107075.1-201ENST00000613695 314 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC006386.1-201ENST00000619436 415 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC022149.2-201ENST00000621061 203 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC243312.2-201ENST00000623340 601 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC091925.2-201ENST00000625059 256 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AC090897.3-201ENST00000636973 1157 ntBASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ATG4BQ9Y4P1 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 MTND4P34-201ENST00000572715 1371 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 RNU4-92P-201ENST00000363783 136 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 Y_RNA.192-201ENST00000363977 102 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 MIR218-2-201ENST00000385006 110 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 RPS3AP25-201ENST00000411660 793 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AL592310.1-201ENST00000414330 671 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AC093578.1-201ENST00000415219 368 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 MTND4LP10-201ENST00000435146 291 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 RPL21P23-201ENST00000446654 460 ntBASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.3□□□□□ -1.88
ATG4BQ9Y4P1 RPL12P26-201ENST00000452430 487 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms