Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 SPRR2C-201ENST00000290702 219 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RNU6-532P-201ENST00000384318 107 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AL121972.1-201ENST00000402023 252 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RNU6-193P-201ENST00000410977 107 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RAB9AP3-201ENST00000412737 573 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RPF2P1-201ENST00000424137 906 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AC007560.1-201ENST00000426912 237 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AC006028.1-201ENST00000438379 402 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 ARF4P4-201ENST00000439608 520 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RAB9AP1-201ENST00000449393 573 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 MTND2P8-201ENST00000450555 1025 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 SETP20-201ENST00000457046 852 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AC106707.2-201ENST00000484182 374 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RPL36AP51-201ENST00000487216 318 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 RPL7P51-201ENST00000490532 749 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 ACTR3BP4-201ENST00000503033 1244 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 PRELID3BP5-201ENST00000508612 460 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 HPRT1P1-201ENST00000509498 657 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 SNORA31.21-201ENST00000517180 77 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 SNORA31.23-201ENST00000517219 133 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 MTND2P26-201ENST00000528255 1029 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AC011611.1-201ENST00000552179 197 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 CKS1BP1-201ENST00000555221 240 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 HSPE1P5-201ENST00000561489 272 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AGGF1P6-201ENST00000569213 976 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 MIR4277-201ENST00000578298 84 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AL627230.6-201ENST00000611129 280 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AL590099.1-201ENST00000615276 138 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AL355365.1-201ENST00000616480 294 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 AC015726.3-201ENST00000624501 418 ntBASIC1.36□□□□□ -2.19
LINC00643Q86TS7 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 RNA5SP50-201ENST00000363731 107 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 GLS-203ENST00000409215 632 ntTSL 4 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 RNA5SP80-201ENST00000410475 111 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 RPS20P15-201ENST00000412792 311 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 SNORD56-201ENST00000413522 71 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC005005.2-201ENST00000420779 380 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 HMGN2P19-201ENST00000425149 265 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 RNF2P1-201ENST00000442955 1010 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 OR6K5P-201ENST00000447050 945 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC105252.1-201ENST00000503089 286 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC093281.2-201ENST00000510153 597 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 PSMA2P1-201ENST00000526365 646 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL391156.1-201ENST00000554965 554 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL049838.1-201ENST00000563647 981 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 MIR4286-201ENST00000580651 93 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 MIR5002-201ENST00000584713 97 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 PCNAP1-202ENST00000595299 752 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AC090510.2-201ENST00000617465 629 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 OR1S1-201ENST00000624470 978 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 AL390862.1-201ENST00000635467 1469 ntBASIC1.35□□□□□ -2.19
LINC00643Q86TS7 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
LINC00643Q86TS7 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL161912.2-201ENST00000565707 3007 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 RNA5-8SP4-201ENST00000365096 150 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 RNU6-398P-201ENST00000384143 109 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 HMGB1P11-201ENST00000413899 637 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL445685.2-201ENST00000422551 342 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL512649.1-201ENST00000428997 581 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms