Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MIR4284-201ENST00000578924 81 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 Z84480.1-201ENST00000605131 311 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC093788.1-201ENST00000609356 927 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AL020991.1-201ENST00000612314 373 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC025253.1-201ENST00000613623 543 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.82□□□□□ -1.64
CBX4O00257 AL161637.1-201ENST00000622380 412 ntBASIC4.82□□□□□ -1.64
CBX4O00257 DUXAP9-208ENST00000622815 614 ntBASIC4.82□□□□□ -1.64
CBX4O00257 AC005609.4-201ENST00000625071 447 ntBASIC4.82□□□□□ -1.64
CBX4O00257 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.82□□□□□ -1.64
CBX4O00257 OR52H1-202ENST00000641796 1061 ntBASIC4.82□□□□□ -1.64
CBX4O00257 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CBX4O00257 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 AC000374.1-201ENST00000434698 1745 ntBASIC4.82□□□□□ -1.64
CBX4O00257 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.82□□□□□ -1.64
CBX4O00257 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.82□□□□□ -1.64
CBX4O00257 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
CBX4O00257 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CBX4O00257 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.81□□□□□ -1.64
CBX4O00257 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 RNU6-263P-201ENST00000363811 107 ntBASIC4.81□□□□□ -1.64
CBX4O00257 SNORA70.2-201ENST00000364506 135 ntBASIC4.81□□□□□ -1.64
CBX4O00257 RNU11-4P-201ENST00000391149 133 ntBASIC4.81□□□□□ -1.64
CBX4O00257 RNU6-876P-201ENST00000391295 104 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AL590762.2-201ENST00000395798 571 ntBASIC4.81□□□□□ -1.64
CBX4O00257 RNU2-47P-201ENST00000410649 186 ntBASIC4.81□□□□□ -1.64
CBX4O00257 RN7SKP247-201ENST00000411094 308 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AMD1P2-201ENST00000412936 992 ntBASIC4.81□□□□□ -1.64
CBX4O00257 JKAMPP1-201ENST00000413804 919 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC009237.5-201ENST00000414271 501 ntBASIC4.81□□□□□ -1.64
CBX4O00257 ZNF90P2-204ENST00000419323 1075 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 H2AFZP5-201ENST00000446960 382 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.81□□□□□ -1.64
CBX4O00257 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 RNA5SP103-201ENST00000459503 118 ntBASIC4.81□□□□□ -1.64
CBX4O00257 HMGB1P25-201ENST00000468402 607 ntBASIC4.81□□□□□ -1.64
CBX4O00257 RPL21P103-201ENST00000479921 488 ntBASIC4.81□□□□□ -1.64
CBX4O00257 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.81□□□□□ -1.64
CBX4O00257 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.81□□□□□ -1.64
CBX4O00257 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 HMGN1P28-201ENST00000521340 364 ntBASIC4.81□□□□□ -1.64
CBX4O00257 OR4R3P-201ENST00000525084 838 ntBASIC4.81□□□□□ -1.64
CBX4O00257 OR4R1P-201ENST00000529879 463 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC009643.1-201ENST00000532030 391 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AP000857.1-201ENST00000532151 543 ntBASIC4.81□□□□□ -1.64
CBX4O00257 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.81□□□□□ -1.64
CBX4O00257 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.81□□□□□ -1.64
CBX4O00257 OR4T1P-201ENST00000554933 911 ntBASIC4.81□□□□□ -1.64
CBX4O00257 PARP1P2-201ENST00000556806 195 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC098848.2-201ENST00000588023 330 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.81□□□□□ -1.64
CBX4O00257 LLPHP1-201ENST00000603571 367 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC099669.2-201ENST00000616549 437 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC015914.2-201ENST00000618167 288 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC092794.2-201ENST00000620933 563 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AL356585.4-201ENST00000623078 1229 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC009033.1-201ENST00000624279 431 ntBASIC4.81□□□□□ -1.64
CBX4O00257 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 AL445487.1-201ENST00000415694 1580 ntBASIC4.81□□□□□ -1.64
CBX4O00257 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.81□□□□□ -1.64
CBX4O00257 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 AC139713.2-214ENST00000642059 1811 ntBASIC4.81□□□□□ -1.64
CBX4O00257 NMD3P1-201ENST00000439704 1488 ntBASIC4.81□□□□□ -1.64
CBX4O00257 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.81□□□□□ -1.64
CBX4O00257 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CBX4O00257 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CBX4O00257 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.81□□□□□ -1.64
CBX4O00257 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 AC015813.6-201ENST00000624409 5808 ntBASIC4.8□□□□□ -1.64
CBX4O00257 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CBX4O00257 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.8□□□□□ -1.64
CBX4O00257 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 447.7 ms