Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 MTND1P4-201ENST00000435196 415 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 RPL7P36-201ENST00000444633 681 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC005297.2-201ENST00000450430 606 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 USP9YP12-201ENST00000450481 570 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 UQCRHP4-201ENST00000471686 272 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC104563.1-201ENST00000476147 376 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 FAM172BP-201ENST00000487497 1089 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 HMGB1P36-201ENST00000487709 576 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC107401.1-201ENST00000503426 685 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 PPBPP1-201ENST00000510807 373 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC023632.4-201ENST00000517783 191 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 OR8R1P-201ENST00000543943 764 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC027807.1-201ENST00000559921 996 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 SEPT7P9-203ENST00000604116 343 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC112191.3-201ENST00000604371 277 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AL390208.1-201ENST00000605885 644 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 Z98200.1-201ENST00000607298 470 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC131902.3-201ENST00000611767 581 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC108479.2-201ENST00000617314 601 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 AC099654.13-201ENST00000639774 207 ntBASIC4.22□□□□□ -1.73
VPS4AQ9UN37 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
VPS4AQ9UN37 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
VPS4AQ9UN37 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VPS4AQ9UN37 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.21□□□□□ -1.73
VPS4AQ9UN37 CCT4P2-201ENST00000233836 1548 ntBASIC4.21□□□□□ -1.73
VPS4AQ9UN37 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VPS4AQ9UN37 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.21□□□□□ -1.73
VPS4AQ9UN37 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
VPS4AQ9UN37 RNU1-15P-201ENST00000353977 144 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 SNORA40.3-201ENST00000390964 122 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 Y_RNA.582-201ENST00000391023 95 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 RNA5SP39-201ENST00000411245 120 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AIMP1P1-201ENST00000418670 937 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC007742.1-201ENST00000425789 329 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AL590233.1-201ENST00000430017 456 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 ELOCP26-201ENST00000436067 329 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 PDSS1P2-201ENST00000449397 678 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 RPS7P7-201ENST00000463499 571 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 PLGLA-201ENST00000465668 449 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC138853.1-201ENST00000503549 823 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 RN7SKP277-201ENST00000516895 283 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 OR5M7P-201ENST00000526140 972 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AP003392.2-201ENST00000527269 208 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 CYCSP29-201ENST00000533731 318 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC245505.1-201ENST00000556398 224 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC115621.1-201ENST00000604653 858 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC006566.1-201ENST00000608943 513 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC092794.1-201ENST00000612734 582 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AC004825.2-201ENST00000616634 455 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 AL359893.1-201ENST00000447628 1580 ntBASIC4.21□□□□□ -1.74
VPS4AQ9UN37 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.21□□□□□ -1.74
VPS4AQ9UN37 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
VPS4AQ9UN37 PNPT1P2-201ENST00000456768 2050 ntBASIC4.2□□□□□ -1.74
VPS4AQ9UN37 LINC02471-203ENST00000641941 4752 ntBASIC4.2□□□□□ -1.74
VPS4AQ9UN37 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.2□□□□□ -1.74
VPS4AQ9UN37 AC016588.2-201ENST00000632484 3021 ntBASIC4.2□□□□□ -1.74
VPS4AQ9UN37 AC092447.10-201ENST00000620607 1652 ntBASIC4.2□□□□□ -1.74
VPS4AQ9UN37 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS4AQ9UN37 AL049780.3-201ENST00000624612 1583 ntBASIC4.2□□□□□ -1.74
VPS4AQ9UN37 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms