Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NPM1P41-201ENST00000512920 831 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 SMURF2P1-201ENST00000514992 481 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 CYP2C61P-201ENST00000604072 290 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC140113.4-201ENST00000622087 222 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC005086.4-201ENST00000623065 213 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC244517.12-201ENST00000623581 663 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC079597.1-201ENST00000624306 508 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC009161.2-201ENST00000624626 138 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 U2.22-201ENST00000636441 106 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL672167.1-203ENST00000641299 2975 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 OR4G1P-203ENST00000641984 1631 ntBASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC39Q9UFE4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 OR51H2P-202ENST00000641424 3046 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 LINC01109-201ENST00000603837 3081 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 SNURFL-201ENST00000309296 343 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 SNORA62.2-201ENST00000364672 152 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 DEFB109C-201ENST00000382575 264 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 DEFB109B-201ENST00000382656 264 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RNU6-171P-201ENST00000384354 107 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RPS20P2-201ENST00000402520 389 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 MIR1305-201ENST00000408300 86 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RNU2-8P-201ENST00000410727 190 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RNU4-14P-201ENST00000410858 122 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RN7SKP247-201ENST00000411094 308 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 MTCYBP10-201ENST00000424905 650 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 DUTP6-201ENST00000425573 462 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AL137792.2-201ENST00000443484 235 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RPL7P59-201ENST00000447700 943 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 VN1R17P-201ENST00000472048 1090 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RN7SL799P-201ENST00000475891 298 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC012181.1-201ENST00000479895 423 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC093303.1-201ENST00000514549 295 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 RNU6-1003P-201ENST00000517099 105 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC022861.1-201ENST00000522981 663 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC092490.3-201ENST00000545370 572 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 MIR4680-201ENST00000580906 66 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC012603.1-201ENST00000606424 528 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC091979.2-201ENST00000607514 214 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AP004247.3-201ENST00000608682 624 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC090510.2-201ENST00000617465 629 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 MIR6826-201ENST00000617808 98 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 AL359757.2-201ENST00000624309 274 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 Z69720.2-201ENST00000624755 279 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 NUP58P1-201ENST00000502546 1738 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 DBF4P1-201ENST00000412976 1892 ntBASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC39Q9UFE4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RPL23P2-201ENST00000320371 421 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RNU6-379P-201ENST00000363813 104 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RNA5SP28-201ENST00000363841 119 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC117470.1-201ENST00000381974 330 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 RPL23AP32-201ENST00000395315 459 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 MIR320C1-201ENST00000408566 88 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AL136133.1-201ENST00000413694 376 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC009313.2-201ENST00000417893 1941 ntBASIC5.61□□□□□ -1.51
CCDC39Q9UFE4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms