Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC007256.1-201ENST00000392253 2765 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 ZNF29P-201ENST00000225587 168 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 NACA3P-201ENST00000359690 648 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 MIR148B-201ENST00000362252 99 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RNU6-600P-201ENST00000362524 99 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 Y_RNA.25-201ENST00000362528 102 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RNU4-35P-201ENST00000362588 141 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RNU6-989P-201ENST00000362756 107 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 SNORD82-201ENST00000365530 70 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 RNU6-730P-201ENST00000383954 104 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 SNORA51.6-201ENST00000384151 125 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 SNORD17-201ENST00000390930 237 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 MTCO2P8-201ENST00000412213 658 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC106883.1-201ENST00000418805 562 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 FNDC3CP-201ENST00000420795 1155 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL513174.1-201ENST00000423182 629 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 NANOGP5-201ENST00000424456 877 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RPL7P44-201ENST00000424827 742 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL645638.1-201ENST00000440519 361 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 snoU13.3-201ENST00000459441 104 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 PABPC1P3-201ENST00000469174 459 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 SYPL1P1-201ENST00000473622 768 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 OR4G11P-201ENST00000492842 939 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AP002812.1-201ENST00000495378 474 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC006499.5-201ENST00000505037 514 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RNU6-1225P-201ENST00000516336 65 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RN7SKP244-201ENST00000516513 307 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 RNU6-1261P-201ENST00000517194 104 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AADACP1-206ENST00000561502 1193 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL049838.1-201ENST00000563647 981 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC067852.3-201ENST00000589177 561 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AL390838.2-201ENST00000602394 274 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 MTND3P19-201ENST00000603825 345 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 IGHV3-29-201ENST00000604817 344 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC124312.4-201ENST00000605533 310 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 U3.45-201ENST00000607547 219 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC090772.4-201ENST00000623599 362 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC092184.1-201ENST00000625042 715 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
SKA3Q8IX90 AC032011.1-201ENST00000611703 1549 ntBASIC3.02□□□□□ -1.93
SKA3Q8IX90 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.02□□□□□ -1.93
SKA3Q8IX90 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC107982.1-201ENST00000507171 1300 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
SKA3Q8IX90 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SKA3Q8IX90 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
SKA3Q8IX90 RNU6-413P-201ENST00000384115 107 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 RNU6-761P-201ENST00000384148 107 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 RNA5SP56-201ENST00000410277 118 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 RNU4-78P-201ENST00000410940 126 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 MTATP6P20-201ENST00000414147 562 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC093578.1-201ENST00000415219 368 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
SKA3Q8IX90 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC092648.1-201ENST00000425870 423 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC127537.2-201ENST00000439258 465 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 RPL23AP76-201ENST00000441860 458 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AL662791.1-201ENST00000441992 928 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.01□□□□□ -1.93
SKA3Q8IX90 PDSS1P2-201ENST00000449397 678 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 RPL26P28-201ENST00000451325 435 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 RFC5P1-201ENST00000454419 874 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC092155.2-201ENST00000454675 477 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 DUXAP8-207ENST00000456786 622 ntBASIC3.01□□□□□ -1.93
SKA3Q8IX90 AC091179.1-201ENST00000461606 579 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms