Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.42□□□□□ -1.38
COL9A1P20849 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.41□□□□□ -1.38
COL9A1P20849 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL9A1P20849 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL9A1P20849 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL9A1P20849 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 AC092079.1-201ENST00000558620 1985 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 RNA5SP46-201ENST00000362370 120 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 Y_RNA.43-201ENST00000362670 111 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL9A1P20849 AC245096.1-201ENST00000413104 546 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.41□□□□□ -1.38
COL9A1P20849 RPS15AP40-201ENST00000419621 391 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 AC245028.1-201ENST00000423259 256 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 AL663074.2-201ENST00000440621 479 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 AC007395.1-201ENST00000451333 677 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 RNU7-87P-201ENST00000459343 62 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 RN7SL714P-201ENST00000487050 298 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC6.41□□□□□ -1.38
COL9A1P20849 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC6.41□□□□□ -1.38
COL9A1P20849 AC095057.1-201ENST00000507583 168 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.41□□□□□ -1.38
COL9A1P20849 SNORA70.20-201ENST00000516848 126 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL9A1P20849 SNRPGP16-201ENST00000533275 226 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC6.41□□□□□ -1.38
COL9A1P20849 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC6.41□□□□□ -1.38
COL9A1P20849 MIR4480-201ENST00000582492 71 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
COL9A1P20849 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.41□□□□□ -1.38
COL9A1P20849 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.41□□□□□ -1.38
COL9A1P20849 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 AL359976.1-201ENST00000418655 3528 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 SMG1P7-201ENST00000565246 2704 ntBASIC6.41□□□□□ -1.38
COL9A1P20849 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
COL9A1P20849 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.4□□□□□ -1.38
COL9A1P20849 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.38
COL9A1P20849 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 SPATA31B1P-201ENST00000434692 4016 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL9A1P20849 SNORA25.1-201ENST00000362326 128 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
COL9A1P20849 MIR541-201ENST00000401360 84 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 AC099677.1-201ENST00000420575 175 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.4□□□□□ -1.38
COL9A1P20849 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC6.4□□□□□ -1.38
COL9A1P20849 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC6.4□□□□□ -1.38
COL9A1P20849 AC002553.3-201ENST00000453002 341 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 RPS29P33-201ENST00000456717 146 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 AC114982.1-201ENST00000469402 321 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 ANXA2P1-201ENST00000505539 926 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC6.4□□□□□ -1.38
COL9A1P20849 Y_RNA.706-201ENST00000516933 99 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 Y_RNA.719-201ENST00000517156 106 ntBASIC6.4□□□□□ -1.38
COL9A1P20849 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.4□□□□□ -1.38
COL9A1P20849 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.4□□□□□ -1.38
COL9A1P20849 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC6.4□□□□□ -1.38
COL9A1P20849 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.39
COL9A1P20849 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.39
COL9A1P20849 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC6.4□□□□□ -1.39
COL9A1P20849 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL9A1P20849 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL9A1P20849 BTBD10P1-201ENST00000549824 1352 ntBASIC6.4□□□□□ -1.39
COL9A1P20849 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL9A1P20849 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.39
COL9A1P20849 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC6.4□□□□□ -1.39
COL9A1P20849 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
COL9A1P20849 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL9A1P20849 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.4□□□□□ -1.39
COL9A1P20849 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms