Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RN7SKP224-201ENST00000364140 325 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 Y_RNA.489-201ENST00000384410 101 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 MRPL42P3-201ENST00000401492 326 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AF186996.5-201ENST00000418098 904 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL450023.3-201ENST00000440592 271 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC098591.2-201ENST00000510152 315 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC098976.1-201ENST00000513014 541 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RNA5SP464-201ENST00000516251 108 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RN7SKP92-201ENST00000517266 244 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AP003072.2-201ENST00000527756 676 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 PTP4A1P6-201ENST00000531034 478 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 NCAPGP2-201ENST00000557911 754 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 MIR3158-1-201ENST00000583596 81 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC243773.3-201ENST00000613270 256 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL672167.1-204ENST00000641875 3017 ntBASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.66□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 IGKV7-3-201ENST00000357453 298 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RNU6-1097P-201ENST00000363586 107 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RNU6-777P-201ENST00000364265 104 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RNU6-108P-201ENST00000365558 107 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 U3.22-201ENST00000391120 215 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RNU4-14P-201ENST00000410858 122 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RN7SKP247-201ENST00000411094 308 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 HMGB3P2-201ENST00000411913 584 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL136133.1-201ENST00000413694 376 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC092634.6-201ENST00000418558 192 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 PDSS1P1-201ENST00000422953 1114 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RGS17P1-201ENST00000423358 553 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RPS27AP12-201ENST00000429552 465 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 TXNP1-201ENST00000441872 371 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RPS4XP10-201ENST00000465034 731 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 PPP1R11P1-201ENST00000486095 376 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC104564.1-201ENST00000493028 407 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 TTC39CP1-201ENST00000512513 755 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 RNA5SP43-201ENST00000516559 110 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 APOOP3-201ENST00000536787 586 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 MIR3167-201ENST00000579623 85 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 PRR13P7-201ENST00000605538 430 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC100812.1-201ENST00000607622 580 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 AC010149.2-201ENST00000637608 315 ntBASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 FAP-203ENST00000443424 2598 ntTSL 2 BASIC6.65□□□□□ -1.34
SENP3-EIF4A1A0A087X0R7 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SDAD1P1-202ENST00000524156 2051 ntBASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.65□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SALL4P2-201ENST00000423288 2910 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms