Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 LINC01311-201ENST00000565162 1445 ntBASIC21.14■□□□□ 0.98
NOD1Q9Y239 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NOD1Q9Y239 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NOD1Q9Y239 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.14■□□□□ 0.98
NOD1Q9Y239 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 STARP1-201ENST00000397973 869 ntBASIC21.14■□□□□ 0.97
NOD1Q9Y239 AL450487.1-201ENST00000426799 995 ntBASIC21.14■□□□□ 0.97
NOD1Q9Y239 DUSP5P1-201ENST00000441325 1139 ntBASIC21.14■□□□□ 0.97
NOD1Q9Y239 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
NOD1Q9Y239 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
NOD1Q9Y239 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 AL512408.1-201ENST00000569378 2000 ntBASIC21.13■□□□□ 0.97
NOD1Q9Y239 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NOD1Q9Y239 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.13■□□□□ 0.97
NOD1Q9Y239 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 AL391422.3-201ENST00000603791 2761 ntBASIC21.12■□□□□ 0.97
NOD1Q9Y239 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.12■□□□□ 0.97
NOD1Q9Y239 CLEC4GP1-201ENST00000596555 870 ntBASIC21.12■□□□□ 0.97
NOD1Q9Y239 AC083849.1-201ENST00000615227 514 ntBASIC21.12■□□□□ 0.97
NOD1Q9Y239 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NOD1Q9Y239 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.11■□□□□ 0.97
NOD1Q9Y239 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NOD1Q9Y239 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NOD1Q9Y239 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms