Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
AP4E1Q9UPM8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
AP4E1Q9UPM8 KRT8P41-201ENST00000533985 1514 ntBASIC19.92■□□□□ 0.78
AP4E1Q9UPM8 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 KRT16P1-201ENST00000399124 1418 ntBASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
AP4E1Q9UPM8 BX323043.1-201ENST00000641006 1765 ntBASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 AC073195.1-201ENST00000607241 877 ntBASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 CR392000.1-201ENST00000624770 1228 ntBASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 AL049812.1-201ENST00000432563 2267 ntBASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 AC098818.2-201ENST00000564925 2320 ntBASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
AP4E1Q9UPM8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 TSPY21P-201ENST00000433481 731 ntBASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 IRX1P1-201ENST00000438849 1838 ntBASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AL135905.2-201ENST00000584934 1404 ntBASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
AP4E1Q9UPM8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
AP4E1Q9UPM8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms