Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CDH9Q9ULB4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH9Q9ULB4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CDH9Q9ULB4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH9Q9ULB4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 INGX-201ENST00000359239 846 ntBASIC20.29■□□□□ 0.84
CDH9Q9ULB4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 TSPY17P-201ENST00000450329 467 ntBASIC20.29■□□□□ 0.84
CDH9Q9ULB4 ECEL1P2-202ENST00000465689 757 ntBASIC20.29■□□□□ 0.84
CDH9Q9ULB4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 AL023803.3-201ENST00000615559 522 ntBASIC20.29■□□□□ 0.84
CDH9Q9ULB4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH9Q9ULB4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 AC113347.1-201ENST00000413321 391 ntBASIC20.28■□□□□ 0.84
CDH9Q9ULB4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 SLC25A3P1-201ENST00000443844 931 ntBASIC20.28■□□□□ 0.84
CDH9Q9ULB4 FAM210CP-201ENST00000445714 574 ntBASIC20.28■□□□□ 0.84
CDH9Q9ULB4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH9Q9ULB4 AC092338.2-201ENST00000568827 1415 ntBASIC20.27■□□□□ 0.84
CDH9Q9ULB4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 RCN1P1-201ENST00000400413 996 ntBASIC20.27■□□□□ 0.84
CDH9Q9ULB4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 AL353719.1-201ENST00000566847 864 ntBASIC20.27■□□□□ 0.84
CDH9Q9ULB4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 AC010653.2-201ENST00000623505 997 ntBASIC20.27■□□□□ 0.84
CDH9Q9ULB4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH9Q9ULB4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CDH9Q9ULB4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.26■□□□□ 0.83
CDH9Q9ULB4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH9Q9ULB4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms