Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 TREX1-205ENST00000625293 1783 ntBASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.25■□□□□ 0.99
CCDC113Q9H0I3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 AP000525.1-201ENST00000608286 694 ntBASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CCDC113Q9H0I3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 UNC93B2-201ENST00000285383 730 ntBASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 AC130371.2-201ENST00000619443 611 ntBASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 HCG11-201ENST00000411553 5696 ntBASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CCDC113Q9H0I3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 AC087499.1-201ENST00000418141 1075 ntBASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CCDC113Q9H0I3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 AC104417.2-201ENST00000562989 1793 ntBASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 KRT8P41-201ENST00000533985 1514 ntBASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 DGCR10-201ENST00000609839 495 ntBASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 KRT8P9-201ENST00000558927 1449 ntBASIC21.21■□□□□ 0.99
CCDC113Q9H0I3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.2■□□□□ 0.99
CCDC113Q9H0I3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CCDC113Q9H0I3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.2■□□□□ 0.98
CCDC113Q9H0I3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CCDC113Q9H0I3 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms