Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 AC246785.2-201ENST00000432512 513 ntBASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC23.33■■□□□ 1.33
RTFDC1Q9BY42 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
RTFDC1Q9BY42 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
RTFDC1Q9BY42 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
RTFDC1Q9BY42 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC23.33■■□□□ 1.32
RTFDC1Q9BY42 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AC104417.2-201ENST00000562989 1793 ntBASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AC034232.1-201ENST00000506026 1064 ntBASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 MIR3652-201ENST00000579335 131 ntBASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AC092329.2-201ENST00000598402 547 ntBASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTFDC1Q9BY42 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 AC016734.2-201ENST00000624325 1377 ntBASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 TSSC2-201ENST00000450217 709 ntBASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 RN7SL510P-201ENST00000581311 263 ntBASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC23.31■■□□□ 1.32
RTFDC1Q9BY42 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AC099778.1-201ENST00000568593 1911 ntBASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 FDX1P1-201ENST00000449115 551 ntBASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 AC011498.5-201ENST00000592027 486 ntBASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTFDC1Q9BY42 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
RTFDC1Q9BY42 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms