Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 AC244015.2-201ENST00000616358 1861 ntBASIC19.01■□□□□ 0.63
VPS13AQ96RL7 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
VPS13AQ96RL7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS13AQ96RL7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
VPS13AQ96RL7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 MIR564-202ENST00000385049 94 ntBASIC19■□□□□ 0.63
VPS13AQ96RL7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19■□□□□ 0.63
VPS13AQ96RL7 TSPY22P-201ENST00000427496 604 ntBASIC19■□□□□ 0.63
VPS13AQ96RL7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 POLD2P1-201ENST00000511220 997 ntBASIC19■□□□□ 0.63
VPS13AQ96RL7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19■□□□□ 0.63
VPS13AQ96RL7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 FEM1AP1-201ENST00000431297 1995 ntBASIC19■□□□□ 0.63
VPS13AQ96RL7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
VPS13AQ96RL7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
VPS13AQ96RL7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 KRT8P26-201ENST00000534154 1276 ntBASIC19■□□□□ 0.63
VPS13AQ96RL7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VPS13AQ96RL7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS13AQ96RL7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS13AQ96RL7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS13AQ96RL7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.99■□□□□ 0.63
VPS13AQ96RL7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 AL691432.2-201ENST00000607222 2038 ntBASIC18.99■□□□□ 0.63
VPS13AQ96RL7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 MIR940-201ENST00000401276 94 ntBASIC18.99■□□□□ 0.63
VPS13AQ96RL7 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS13AQ96RL7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 AC026310.3-201ENST00000625186 2373 ntBASIC18.98■□□□□ 0.63
VPS13AQ96RL7 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS13AQ96RL7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 AC005104.2-201ENST00000427818 678 ntBASIC18.97■□□□□ 0.63
VPS13AQ96RL7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS13AQ96RL7 AL121772.3-201ENST00000610840 674 ntBASIC18.97■□□□□ 0.63
VPS13AQ96RL7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms