Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 AL158211.5-201ENST00000623583 2518 ntBASIC17.22■□□□□ 0.35
CPNE4Q96A23 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 MESTP1-201ENST00000404287 994 ntBASIC17.22■□□□□ 0.35
CPNE4Q96A23 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 AC011506.1-201ENST00000474329 610 ntBASIC17.22■□□□□ 0.35
CPNE4Q96A23 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 AC130371.2-201ENST00000619443 611 ntBASIC17.22■□□□□ 0.35
CPNE4Q96A23 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CPNE4Q96A23 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.22■□□□□ 0.35
CPNE4Q96A23 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 FAM207BP-201ENST00000447172 505 ntBASIC17.21■□□□□ 0.35
CPNE4Q96A23 RBM17P1-201ENST00000453646 1190 ntBASIC17.21■□□□□ 0.35
CPNE4Q96A23 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPNE4Q96A23 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.21■□□□□ 0.35
CPNE4Q96A23 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.21■□□□□ 0.34
CPNE4Q96A23 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
CPNE4Q96A23 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.21■□□□□ 0.34
CPNE4Q96A23 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 AC091390.4-202ENST00000476426 537 ntBASIC17.2■□□□□ 0.34
CPNE4Q96A23 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 AP000692.2-201ENST00000608391 879 ntBASIC17.2■□□□□ 0.34
CPNE4Q96A23 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 KRT8P41-201ENST00000533985 1514 ntBASIC17.2■□□□□ 0.34
CPNE4Q96A23 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CPNE4Q96A23 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.2■□□□□ 0.34
CPNE4Q96A23 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CPNE4Q96A23 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.19■□□□□ 0.34
CPNE4Q96A23 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CPNE4Q96A23 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CPNE4Q96A23 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.19■□□□□ 0.34
CPNE4Q96A23 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CPNE4Q96A23 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms