Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLHC1Q8NHS4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 KRT18P16-201ENST00000510337 1294 ntBASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLHC1Q8NHS4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLHC1Q8NHS4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.39■□□□□ 0.54
CLHC1Q8NHS4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.54
CLHC1Q8NHS4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLHC1Q8NHS4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLHC1Q8NHS4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 AL355802.2-201ENST00000402069 882 ntBASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 AL121829.2-201ENST00000620908 328 ntBASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 FP475955.4-201ENST00000623131 1990 ntBASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLHC1Q8NHS4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLHC1Q8NHS4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms