Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 PVRIG2P-201ENST00000435460 978 ntBASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 KRT17P6-201ENST00000453795 1220 ntBASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 AL121672.3-201ENST00000608644 468 ntBASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SLC44A3Q8N4M1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.64■□□□□ 0.74
SLC44A3Q8N4M1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SLC44A3Q8N4M1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SLC44A3Q8N4M1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 AP000347.1-202ENST00000435868 847 ntBASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 AL137060.1-201ENST00000618151 2648 ntBASIC19.64■□□□□ 0.73
SLC44A3Q8N4M1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 KRT8P10-201ENST00000450021 1447 ntBASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 FAAHP1-202ENST00000446499 1238 ntBASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SLC44A3Q8N4M1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 AP002383.4-201ENST00000442518 975 ntBASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SLC44A3Q8N4M1 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SLC44A3Q8N4M1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms