Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 UNC93B5-201ENST00000530315 699 ntBASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNF111Q6ZNA4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 SOX15-203ENST00000570788 1093 ntBASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 AC006557.6-201ENST00000623071 864 ntBASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 AC120498.9-201ENST00000339021 3867 ntBASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNF111Q6ZNA4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.6■□□□□ 0.57
RNF111Q6ZNA4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 KRT16P6-202ENST00000425692 1426 ntBASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
RNF111Q6ZNA4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms