Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
SRP54P61011 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.92■□□□□ 0.62
SRP54P61011 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SRP54P61011 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SRP54P61011 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SRP54P61011 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SRP54P61011 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SRP54P61011 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.92■□□□□ 0.62
SRP54P61011 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SRP54P61011 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SRP54P61011 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.91■□□□□ 0.62
SRP54P61011 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SRP54P61011 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.91■□□□□ 0.62
SRP54P61011 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
SRP54P61011 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.91■□□□□ 0.62
SRP54P61011 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.91■□□□□ 0.62
SRP54P61011 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SRP54P61011 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SRP54P61011 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SRP54P61011 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.91■□□□□ 0.62
SRP54P61011 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SRP54P61011 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SRP54P61011 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SRP54P61011 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.9■□□□□ 0.62
SRP54P61011 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 HMGA1P5-201ENST00000412453 271 ntBASIC18.9■□□□□ 0.62
SRP54P61011 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.9■□□□□ 0.62
SRP54P61011 AC007663.1-201ENST00000438948 1240 ntBASIC18.9■□□□□ 0.62
SRP54P61011 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
SRP54P61011 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.9■□□□□ 0.62
SRP54P61011 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.9■□□□□ 0.62
SRP54P61011 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SRP54P61011 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SRP54P61011 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SRP54P61011 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.9■□□□□ 0.62
SRP54P61011 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SRP54P61011 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SRP54P61011 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.89■□□□□ 0.62
SRP54P61011 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SRP54P61011 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.89■□□□□ 0.62
SRP54P61011 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 AC104417.2-201ENST00000562989 1793 ntBASIC18.89■□□□□ 0.61
SRP54P61011 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
SRP54P61011 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 TSPY17P-201ENST00000450329 467 ntBASIC18.89■□□□□ 0.61
SRP54P61011 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
SRP54P61011 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SRP54P61011 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.89■□□□□ 0.61
SRP54P61011 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SRP54P61011 AL023803.3-201ENST00000615559 522 ntBASIC18.89■□□□□ 0.61
SRP54P61011 AC010653.2-201ENST00000623505 997 ntBASIC18.89■□□□□ 0.61
SRP54P61011 AL590326.2-201ENST00000625139 305 ntBASIC18.89■□□□□ 0.61
SRP54P61011 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 AC092338.2-201ENST00000568827 1415 ntBASIC18.89■□□□□ 0.61
SRP54P61011 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.89■□□□□ 0.61
SRP54P61011 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.89■□□□□ 0.61
SRP54P61011 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
SRP54P61011 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.89■□□□□ 0.61
SRP54P61011 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SRP54P61011 ZNF815P-204ENST00000434898 1737 ntBASIC18.88■□□□□ 0.61
SRP54P61011 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SRP54P61011 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SRP54P61011 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SRP54P61011 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SRP54P61011 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SRP54P61011 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms