Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.58■□□□□ 0.89
COL4A4P53420 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.58■□□□□ 0.89
COL4A4P53420 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL4A4P53420 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
COL4A4P53420 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 AL391422.3-201ENST00000603791 2761 ntBASIC20.58■□□□□ 0.88
COL4A4P53420 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
COL4A4P53420 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 KRT8P41-201ENST00000533985 1514 ntBASIC20.58■□□□□ 0.88
COL4A4P53420 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 AL160286.2-201ENST00000567150 934 ntBASIC20.58■□□□□ 0.88
COL4A4P53420 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL4A4P53420 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.58■□□□□ 0.88
COL4A4P53420 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A4P53420 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL4A4P53420 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.57■□□□□ 0.88
COL4A4P53420 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.57■□□□□ 0.88
COL4A4P53420 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL4A4P53420 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.57■□□□□ 0.88
COL4A4P53420 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A4P53420 AC079781.3-201ENST00000449110 356 ntBASIC20.57■□□□□ 0.88
COL4A4P53420 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A4P53420 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.57■□□□□ 0.88
COL4A4P53420 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A4P53420 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A4P53420 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COL4A4P53420 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A4P53420 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A4P53420 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A4P53420 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A4P53420 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A4P53420 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
COL4A4P53420 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.56■□□□□ 0.88
COL4A4P53420 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.56■□□□□ 0.88
COL4A4P53420 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A4P53420 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
COL4A4P53420 AL732292.2-201ENST00000609649 430 ntBASIC20.56■□□□□ 0.88
COL4A4P53420 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL4A4P53420 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A4P53420 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A4P53420 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A4P53420 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A4P53420 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A4P53420 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A4P53420 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A4P53420 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A4P53420 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A4P53420 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A4P53420 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A4P53420 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.55■□□□□ 0.88
COL4A4P53420 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A4P53420 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
COL4A4P53420 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A4P53420 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A4P53420 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A4P53420 AC140113.3-201ENST00000605663 199 ntBASIC20.54■□□□□ 0.88
COL4A4P53420 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A4P53420 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
COL4A4P53420 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A4P53420 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A4P53420 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms