Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC138894.3-201ENST00000603787 634 ntBASIC26.62■■□□□ 1.85
MSH6P52701 AL353801.3-201ENST00000609898 542 ntBASIC26.62■■□□□ 1.85
MSH6P52701 AF228730.7-201ENST00000641842 219 ntBASIC26.62■■□□□ 1.85
MSH6P52701 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
MSH6P52701 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC26.62■■□□□ 1.85
MSH6P52701 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
MSH6P52701 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
MSH6P52701 AC104819.1-201ENST00000504587 486 ntBASIC26.61■■□□□ 1.85
MSH6P52701 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC26.61■■□□□ 1.85
MSH6P52701 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
MSH6P52701 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC26.61■■□□□ 1.85
MSH6P52701 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 MIR662-201ENST00000384847 95 ntBASIC26.6■■□□□ 1.85
MSH6P52701 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC26.6■■□□□ 1.85
MSH6P52701 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC26.6■■□□□ 1.85
MSH6P52701 TPM1-218ENST00000559281 851 ntTSL 5 BASIC26.6■■□□□ 1.85
MSH6P52701 AP001271.2-201ENST00000624018 1556 ntBASIC26.6■■□□□ 1.85
MSH6P52701 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC26.6■■□□□ 1.85
MSH6P52701 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC26.6■■□□□ 1.85
MSH6P52701 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
MSH6P52701 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.6■■□□□ 1.85
MSH6P52701 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH6P52701 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.59■■□□□ 1.85
MSH6P52701 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH6P52701 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH6P52701 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
MSH6P52701 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC26.59■■□□□ 1.85
MSH6P52701 AL136038.4-201ENST00000603606 1261 ntBASIC26.59■■□□□ 1.85
MSH6P52701 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC26.59■■□□□ 1.85
MSH6P52701 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH6P52701 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
MSH6P52701 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
MSH6P52701 MIR1233-2-201ENST00000408138 82 ntBASIC26.58■■□□□ 1.85
MSH6P52701 MIR1233-1-201ENST00000408722 82 ntBASIC26.58■■□□□ 1.85
MSH6P52701 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
MSH6P52701 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
MSH6P52701 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC26.58■■□□□ 1.85
MSH6P52701 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC26.58■■□□□ 1.85
MSH6P52701 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
MSH6P52701 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH6P52701 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
MSH6P52701 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH6P52701 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC26.58■■□□□ 1.85
MSH6P52701 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
MSH6P52701 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC26.58■■□□□ 1.85
MSH6P52701 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH6P52701 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.58■■□□□ 1.84
MSH6P52701 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH6P52701 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH6P52701 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
MSH6P52701 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC26.58■■□□□ 1.84
MSH6P52701 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
MSH6P52701 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
MSH6P52701 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
MSH6P52701 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH6P52701 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
MSH6P52701 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC26.57■■□□□ 1.84
MSH6P52701 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH6P52701 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
MSH6P52701 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH6P52701 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
MSH6P52701 AKR1C7P-201ENST00000305623 895 ntBASIC26.57■■□□□ 1.84
MSH6P52701 DFFB-203ENST00000341385 572 ntTSL 5 BASIC26.57■■□□□ 1.84
MSH6P52701 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC26.57■■□□□ 1.84
MSH6P52701 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC26.57■■□□□ 1.84
MSH6P52701 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
MSH6P52701 RNF126P1-202ENST00000569893 925 ntBASIC26.57■■□□□ 1.84
MSH6P52701 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
MSH6P52701 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC26.57■■□□□ 1.84
MSH6P52701 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 AC036111.1-201ENST00000533973 1582 ntBASIC26.56■■□□□ 1.84
MSH6P52701 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC26.56■■□□□ 1.84
MSH6P52701 SEC1P-202ENST00000473944 940 ntBASIC26.56■■□□□ 1.84
MSH6P52701 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC26.56■■□□□ 1.84
MSH6P52701 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
MSH6P52701 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC26.56■■□□□ 1.84
MSH6P52701 IL9RP2-201ENST00000423948 1312 ntBASIC26.55■■□□□ 1.84
MSH6P52701 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
MSH6P52701 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
MSH6P52701 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC26.55■■□□□ 1.84
MSH6P52701 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC26.55■■□□□ 1.84
MSH6P52701 AF106564.1-201ENST00000607058 2553 ntBASIC26.55■■□□□ 1.84
MSH6P52701 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
MSH6P52701 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms