Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.09■□□□□ 0.81
COL6A3P12111 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 AC024243.1-201ENST00000609234 778 ntBASIC20.09■□□□□ 0.81
COL6A3P12111 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL6A3P12111 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL6A3P12111 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL6A3P12111 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL6A3P12111 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.08■□□□□ 0.81
COL6A3P12111 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.08■□□□□ 0.81
COL6A3P12111 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
COL6A3P12111 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.08■□□□□ 0.81
COL6A3P12111 FAM215A-202ENST00000632077 792 ntBASIC20.08■□□□□ 0.81
COL6A3P12111 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL6A3P12111 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL6A3P12111 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL6A3P12111 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.08■□□□□ 0.8
COL6A3P12111 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.08■□□□□ 0.8
COL6A3P12111 AC004832.2-201ENST00000426397 482 ntBASIC20.08■□□□□ 0.8
COL6A3P12111 AL645939.2-201ENST00000427340 991 ntBASIC20.08■□□□□ 0.8
COL6A3P12111 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.08■□□□□ 0.8
COL6A3P12111 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.08■□□□□ 0.8
COL6A3P12111 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL6A3P12111 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
COL6A3P12111 AC138761.1-201ENST00000584393 385 ntBASIC20.07■□□□□ 0.8
COL6A3P12111 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.07■□□□□ 0.8
COL6A3P12111 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL6A3P12111 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
COL6A3P12111 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.07■□□□□ 0.8
COL6A3P12111 MIR770-201ENST00000390219 98 ntBASIC20.07■□□□□ 0.8
COL6A3P12111 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL6A3P12111 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL6A3P12111 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.07■□□□□ 0.8
COL6A3P12111 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL6A3P12111 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC20.07■□□□□ 0.8
COL6A3P12111 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
COL6A3P12111 AC190387.1-201ENST00000551683 408 ntBASIC20.07■□□□□ 0.8
COL6A3P12111 AL035252.4-201ENST00000624174 288 ntBASIC20.07■□□□□ 0.8
COL6A3P12111 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.07■□□□□ 0.8
COL6A3P12111 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
COL6A3P12111 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A3P12111 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A3P12111 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL6A3P12111 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
COL6A3P12111 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A3P12111 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A3P12111 NSUN5P1-202ENST00000421140 1535 ntBASIC20.06■□□□□ 0.8
COL6A3P12111 NSUN5P2-203ENST00000457352 1529 ntBASIC20.06■□□□□ 0.8
COL6A3P12111 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.06■□□□□ 0.8
COL6A3P12111 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.06■□□□□ 0.8
COL6A3P12111 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A3P12111 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.06■□□□□ 0.8
COL6A3P12111 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A3P12111 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A3P12111 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL6A3P12111 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL6A3P12111 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A3P12111 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A3P12111 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A3P12111 BCRP1-201ENST00000444246 691 ntBASIC20.05■□□□□ 0.8
COL6A3P12111 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A3P12111 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.05■□□□□ 0.8
COL6A3P12111 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A3P12111 AC011467.4-201ENST00000594891 528 ntBASIC20.05■□□□□ 0.8
COL6A3P12111 AC106028.4-201ENST00000614509 607 ntBASIC20.05■□□□□ 0.8
COL6A3P12111 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A3P12111 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A3P12111 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
COL6A3P12111 AC036111.1-201ENST00000533973 1582 ntBASIC20.05■□□□□ 0.8
COL6A3P12111 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A3P12111 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.05■□□□□ 0.8
COL6A3P12111 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A3P12111 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A3P12111 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A3P12111 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A3P12111 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.04■□□□□ 0.8
COL6A3P12111 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.04■□□□□ 0.8
COL6A3P12111 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms