Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.75■□□□□ 0.59
HOXC4P09017 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 COX11P1-201ENST00000489116 835 ntBASIC18.75■□□□□ 0.59
HOXC4P09017 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXC4P09017 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HOXC4P09017 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXC4P09017 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HOXC4P09017 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.75■□□□□ 0.59
HOXC4P09017 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC4P09017 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC4P09017 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC4P09017 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
HOXC4P09017 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.74■□□□□ 0.59
HOXC4P09017 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 Z82202.1-201ENST00000623446 1880 ntBASIC18.74■□□□□ 0.59
HOXC4P09017 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.74■□□□□ 0.59
HOXC4P09017 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 AK4P3-201ENST00000418260 669 ntBASIC18.74■□□□□ 0.59
HOXC4P09017 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HOXC4P09017 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.74■□□□□ 0.59
HOXC4P09017 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.74■□□□□ 0.59
HOXC4P09017 KRT8P3-201ENST00000519669 1449 ntBASIC18.74■□□□□ 0.59
HOXC4P09017 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.73■□□□□ 0.59
HOXC4P09017 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
HOXC4P09017 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.73■□□□□ 0.59
HOXC4P09017 RNF152P1-201ENST00000397754 604 ntBASIC18.73■□□□□ 0.59
HOXC4P09017 AC117947.1-201ENST00000427448 529 ntBASIC18.73■□□□□ 0.59
HOXC4P09017 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 AL445228.2-201ENST00000605589 952 ntBASIC18.73■□□□□ 0.59
HOXC4P09017 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.73■□□□□ 0.59
HOXC4P09017 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HOXC4P09017 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HOXC4P09017 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.72■□□□□ 0.59
HOXC4P09017 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HOXC4P09017 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.72■□□□□ 0.59
HOXC4P09017 AC063952.2-201ENST00000498792 1227 ntBASIC18.72■□□□□ 0.59
HOXC4P09017 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HOXC4P09017 KRT18P35-201ENST00000510488 1269 ntBASIC18.72■□□□□ 0.59
HOXC4P09017 LINC01238-205ENST00000567549 1107 ntBASIC18.72■□□□□ 0.59
HOXC4P09017 NEK4P2-201ENST00000580004 1012 ntBASIC18.72■□□□□ 0.59
HOXC4P09017 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HOXC4P09017 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 KRT8P45-201ENST00000414328 1447 ntBASIC18.72■□□□□ 0.59
HOXC4P09017 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.72■□□□□ 0.59
HOXC4P09017 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.72■□□□□ 0.59
HOXC4P09017 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HOXC4P09017 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.72■□□□□ 0.59
HOXC4P09017 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.71■□□□□ 0.59
HOXC4P09017 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.71■□□□□ 0.59
HOXC4P09017 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HOXC4P09017 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.71■□□□□ 0.59
HOXC4P09017 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.71■□□□□ 0.59
HOXC4P09017 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
HOXC4P09017 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms