Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
COL4A1P02462 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL4A1P02462 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
COL4A1P02462 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
COL4A1P02462 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC23.54■■□□□ 1.36
COL4A1P02462 HBZP1-201ENST00000354915 429 ntBASIC23.54■■□□□ 1.36
COL4A1P02462 HCG4P8-203ENST00000443049 980 ntBASIC23.54■■□□□ 1.36
COL4A1P02462 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC23.54■■□□□ 1.36
COL4A1P02462 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC23.54■■□□□ 1.36
COL4A1P02462 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC23.54■■□□□ 1.36
COL4A1P02462 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
COL4A1P02462 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 TSPY21P-201ENST00000433481 731 ntBASIC23.54■■□□□ 1.36
COL4A1P02462 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23.54■■□□□ 1.36
COL4A1P02462 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC23.54■■□□□ 1.36
COL4A1P02462 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL4A1P02462 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.54■■□□□ 1.36
COL4A1P02462 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.53■■□□□ 1.36
COL4A1P02462 USP48-205ENST00000421625 2818 ntTSL 2 BASIC23.53■■□□□ 1.36
COL4A1P02462 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 DAP-202ENST00000432074 1048 ntTSL 2 BASIC23.53■■□□□ 1.36
COL4A1P02462 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC23.53■■□□□ 1.36
COL4A1P02462 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.53■■□□□ 1.36
COL4A1P02462 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
COL4A1P02462 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL4A1P02462 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC23.53■■□□□ 1.36
COL4A1P02462 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.53■■□□□ 1.36
COL4A1P02462 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
COL4A1P02462 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
COL4A1P02462 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.52■■□□□ 1.36
COL4A1P02462 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 KRT18P48-201ENST00000434763 852 ntBASIC23.52■■□□□ 1.36
COL4A1P02462 AC092597.1-201ENST00000487352 616 ntBASIC23.52■■□□□ 1.36
COL4A1P02462 LY6E-213ENST00000522528 606 ntTSL 3 BASIC23.52■■□□□ 1.36
COL4A1P02462 AL512604.3-201ENST00000569583 964 ntBASIC23.52■■□□□ 1.36
COL4A1P02462 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC23.52■■□□□ 1.36
COL4A1P02462 NPAP1P7-201ENST00000613027 823 ntBASIC23.52■■□□□ 1.36
COL4A1P02462 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC23.52■■□□□ 1.36
COL4A1P02462 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL4A1P02462 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.52■■□□□ 1.36
COL4A1P02462 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23.52■■□□□ 1.35
COL4A1P02462 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC23.51■■□□□ 1.35
COL4A1P02462 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC23.51■■□□□ 1.35
COL4A1P02462 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A1P02462 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A1P02462 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.51■■□□□ 1.35
COL4A1P02462 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A1P02462 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.51■■□□□ 1.35
COL4A1P02462 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
COL4A1P02462 AL136038.3-201ENST00000561909 1096 ntBASIC23.51■■□□□ 1.35
COL4A1P02462 CLEC4GP1-201ENST00000596555 870 ntBASIC23.51■■□□□ 1.35
COL4A1P02462 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL4A1P02462 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
COL4A1P02462 Z82202.1-201ENST00000623446 1880 ntBASIC23.5■■□□□ 1.35
COL4A1P02462 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC23.5■■□□□ 1.35
COL4A1P02462 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL4A1P02462 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.5■■□□□ 1.35
COL4A1P02462 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.5■■□□□ 1.35
COL4A1P02462 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL4A1P02462 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms