Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.75■□□□□ 0.59
TNFP01375 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.75■□□□□ 0.59
TNFP01375 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.75■□□□□ 0.59
TNFP01375 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 COX11P1-201ENST00000489116 835 ntBASIC18.75■□□□□ 0.59
TNFP01375 LINC01238-205ENST00000567549 1107 ntBASIC18.75■□□□□ 0.59
TNFP01375 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
TNFP01375 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TNFP01375 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TNFP01375 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.75■□□□□ 0.59
TNFP01375 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TNFP01375 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.74■□□□□ 0.59
TNFP01375 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TNFP01375 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TNFP01375 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.74■□□□□ 0.59
TNFP01375 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TNFP01375 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.74■□□□□ 0.59
TNFP01375 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 AC117947.1-201ENST00000427448 529 ntBASIC18.74■□□□□ 0.59
TNFP01375 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TNFP01375 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.74■□□□□ 0.59
TNFP01375 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TNFP01375 AC139887.4-201ENST00000607877 719 ntBASIC18.74■□□□□ 0.59
TNFP01375 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.74■□□□□ 0.59
TNFP01375 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.74■□□□□ 0.59
TNFP01375 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TNFP01375 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.73■□□□□ 0.59
TNFP01375 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.73■□□□□ 0.59
TNFP01375 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 SDHAP1-207ENST00000440850 2000 ntBASIC18.73■□□□□ 0.59
TNFP01375 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
TNFP01375 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
TNFP01375 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
TNFP01375 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.73■□□□□ 0.59
TNFP01375 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.73■□□□□ 0.59
TNFP01375 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.73■□□□□ 0.59
TNFP01375 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.73■□□□□ 0.59
TNFP01375 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.73■□□□□ 0.59
TNFP01375 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
TNFP01375 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.73■□□□□ 0.59
TNFP01375 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
TNFP01375 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TNFP01375 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
TNFP01375 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 RNF152P1-201ENST00000397754 604 ntBASIC18.72■□□□□ 0.59
TNFP01375 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 TSPY23P-201ENST00000440136 739 ntBASIC18.72■□□□□ 0.59
TNFP01375 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.72■□□□□ 0.59
TNFP01375 WWOX-216ENST00000569818 525 ntBASIC18.72■□□□□ 0.59
TNFP01375 AC087388.1-201ENST00000571370 1112 ntBASIC18.72■□□□□ 0.59
TNFP01375 AC140113.3-201ENST00000605663 199 ntBASIC18.72■□□□□ 0.59
TNFP01375 AL031432.5-201ENST00000641059 760 ntBASIC18.72■□□□□ 0.59
TNFP01375 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TNFP01375 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.72■□□□□ 0.59
TNFP01375 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TNFP01375 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms