Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.22■□□□□ 0.83
RTN3O95197 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.22■□□□□ 0.83
RTN3O95197 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
RTN3O95197 KRT18P22-201ENST00000402024 1347 ntBASIC20.22■□□□□ 0.83
RTN3O95197 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.22■□□□□ 0.83
RTN3O95197 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RTN3O95197 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
RTN3O95197 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.21■□□□□ 0.83
RTN3O95197 AC104417.2-201ENST00000562989 1793 ntBASIC20.21■□□□□ 0.83
RTN3O95197 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RTN3O95197 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RTN3O95197 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.21■□□□□ 0.83
RTN3O95197 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.21■□□□□ 0.83
RTN3O95197 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.21■□□□□ 0.83
RTN3O95197 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.21■□□□□ 0.83
RTN3O95197 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RTN3O95197 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.21■□□□□ 0.83
RTN3O95197 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.21■□□□□ 0.83
RTN3O95197 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RTN3O95197 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.2■□□□□ 0.83
RTN3O95197 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 TSPY14P-201ENST00000303979 915 ntBASIC20.2■□□□□ 0.82
RTN3O95197 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.2■□□□□ 0.82
RTN3O95197 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.2■□□□□ 0.82
RTN3O95197 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.2■□□□□ 0.82
RTN3O95197 EGLN1P1-201ENST00000531623 762 ntBASIC20.2■□□□□ 0.82
RTN3O95197 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.2■□□□□ 0.82
RTN3O95197 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RTN3O95197 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.2■□□□□ 0.82
RTN3O95197 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RTN3O95197 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RTN3O95197 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.19■□□□□ 0.82
RTN3O95197 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.19■□□□□ 0.82
RTN3O95197 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.19■□□□□ 0.82
RTN3O95197 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.19■□□□□ 0.82
RTN3O95197 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.19■□□□□ 0.82
RTN3O95197 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.19■□□□□ 0.82
RTN3O95197 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RTN3O95197 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms