Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS4BO75351 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS4BO75351 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
VPS4BO75351 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VPS4BO75351 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 AL161938.1-201ENST00000569833 2180 ntBASIC18.79■□□□□ 0.6
VPS4BO75351 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 CROCCP3-202ENST00000420820 1947 ntBASIC18.79■□□□□ 0.6
VPS4BO75351 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS4BO75351 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS4BO75351 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.79■□□□□ 0.6
VPS4BO75351 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS4BO75351 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 AC138932.1-201ENST00000534164 6830 ntBASIC18.79■□□□□ 0.6
VPS4BO75351 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS4BO75351 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4BO75351 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 ZNF815P-204ENST00000434898 1737 ntBASIC18.78■□□□□ 0.6
VPS4BO75351 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS4BO75351 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS4BO75351 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS4BO75351 SOX15-203ENST00000570788 1093 ntBASIC18.78■□□□□ 0.6
VPS4BO75351 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS4BO75351 AC069544.1-201ENST00000609399 999 ntBASIC18.78■□□□□ 0.6
VPS4BO75351 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VPS4BO75351 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS4BO75351 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS4BO75351 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS4BO75351 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4BO75351 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS4BO75351 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS4BO75351 AL390719.1-204ENST00000412397 1219 ntBASIC18.77■□□□□ 0.6
VPS4BO75351 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.77■□□□□ 0.6
VPS4BO75351 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS4BO75351 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS4BO75351 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS4BO75351 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS4BO75351 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.77■□□□□ 0.6
VPS4BO75351 AP001412.1-201ENST00000608405 714 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms