Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC007496.3-201ENST00000624987 3443 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 RNU1-75P-201ENST00000347264 129 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 SNORA14A-201ENST00000364773 135 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AL359837.1-201ENST00000381357 287 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 SNORD51-201ENST00000384320 80 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 MIR554-201ENST00000384874 96 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 RPL21P17-201ENST00000397467 475 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 RNA5SP38-201ENST00000410750 119 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC126124.2-201ENST00000413542 321 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 Z99755.1-201ENST00000414048 380 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC093578.1-201ENST00000415219 368 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 SSXP9-201ENST00000417503 292 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC012065.2-201ENST00000421295 375 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AL445584.1-201ENST00000431451 330 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AL359073.1-201ENST00000448036 403 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC073387.1-201ENST00000453261 709 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC244505.3-201ENST00000454598 187 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 MTATP6P14-201ENST00000455189 673 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 RPL6P9-201ENST00000466502 859 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AP002884.2-201ENST00000471647 395 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC111000.2-201ENST00000507775 550 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC008127.2-201ENST00000549925 1075 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 MED28P6-201ENST00000558776 231 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 MIR4666A-201ENST00000580160 79 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC006116.7-201ENST00000590141 756 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AP001542.2-201ENST00000593141 364 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AP003973.1-201ENST00000604639 691 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AF129408.1-201ENST00000608767 431 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 AP003476.1-201ENST00000623984 516 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC010872.1-201ENST00000624225 675 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 AC004808.1-201ENST00000627671 721 ntBASIC3.42□□□□□ -1.86
VPS39Q96JC1 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS39Q96JC1 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS39Q96JC1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
VPS39Q96JC1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS39Q96JC1 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AL645937.1-201ENST00000641739 1652 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 RNU5D-1-201ENST00000363299 116 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VPS39Q96JC1 RNU6-298P-201ENST00000390888 96 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC016769.3-201ENST00000396562 315 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC025750.1-201ENST00000399891 379 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 BTF3P8-201ENST00000414577 526 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AL356968.1-201ENST00000416622 474 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 RPL36AP36-201ENST00000418616 301 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 KRR1P1-201ENST00000419430 803 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 RPL31P12-201ENST00000422587 358 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 CYCSP4-201ENST00000429682 331 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 ARF4P4-201ENST00000439608 520 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS39Q96JC1 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC104472.2-201ENST00000469035 601 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 ACTR3P3-201ENST00000480448 893 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 PAICSP4-201ENST00000517543 1253 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
VPS39Q96JC1 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 UBE2NP1-201ENST00000545592 458 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 GTF2IP22-201ENST00000554443 182 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 MTCYBP27-201ENST00000555160 670 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC122134.1-202ENST00000569111 1201 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC008507.1-201ENST00000587506 734 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC090330.1-201ENST00000588646 764 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.41□□□□□ -1.86
VPS39Q96JC1 BNIP3P39-201ENST00000601077 554 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AL158050.2-201ENST00000605336 568 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC018645.2-201ENST00000609151 472 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 VN1R7P-201ENST00000619242 903 ntBASIC3.41□□□□□ -1.86
VPS39Q96JC1 AC084824.4-201ENST00000620106 731 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms