Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC016065.2-201ENST00000514530 444 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RNU6-405P-201ENST00000516637 110 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC136618.2-201ENST00000575091 400 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC091167.4-201ENST00000605079 184 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RNU6-88P-201ENST00000606801 100 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 RMST_9.1-201ENST00000619945 193 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC079228.1-201ENST00000624774 1049 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AC012020.1-201ENST00000624541 1728 ntBASIC4.77□□□□□ -1.65
VPS53Q5VIR6 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
VPS53Q5VIR6 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 FGF7P2-201ENST00000332473 296 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 Y_RNA.6-201ENST00000362350 114 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 PPIAP31-201ENST00000405422 495 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 MIR1251-201ENST00000408552 70 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 RPL31P2-201ENST00000413849 377 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AL512649.1-201ENST00000428997 581 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 ATP5HP2-201ENST00000433885 485 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 COX6CP12-201ENST00000446748 202 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 SSXP1-201ENST00000453640 473 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 RPL30P9-201ENST00000465586 330 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC012170.1-201ENST00000495139 359 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 VWA8P1-201ENST00000510889 176 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC104057.1-201ENST00000515547 497 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 RNA5SP216-201ENST00000516111 123 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 RNA5SP179-201ENST00000517284 121 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AGGF1P8-201ENST00000562979 1000 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 HSPE1P14-201ENST00000605812 302 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 RNA5SP108-201ENST00000605921 117 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC092794.1-201ENST00000612734 582 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 MIR6500-201ENST00000622700 86 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 MTCO1P23-201ENST00000415223 1526 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 ZNF37BP-203ENST00000452306 1352 ntBASIC4.76□□□□□ -1.65
VPS53Q5VIR6 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS53Q5VIR6 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 BDP1P-201ENST00000582658 1990 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 RNU6-501P-201ENST00000364072 100 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 MIR1250-201ENST00000408098 113 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 KCTD9P3-201ENST00000434597 1169 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 MTND1P4-201ENST00000435196 415 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 EPS15P1-201ENST00000448836 336 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AC093899.1-201ENST00000457984 376 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 SNORD108-201ENST00000459332 71 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 ARL2BPP4-201ENST00000506854 471 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 PTGES3P3-201ENST00000511479 482 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 RNU6-583P-201ENST00000516012 92 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 RNU6-352P-201ENST00000516908 107 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 MIR2116-201ENST00000517221 80 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 DEFB131D-201ENST00000526803 184 ntBASIC4.75□□□□□ -1.65
VPS53Q5VIR6 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.75□□□□□ -1.65
VPS53Q5VIR6 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms