Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC6.44□□□□□ -1.38
COL9A1P20849 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.44□□□□□ -1.38
COL9A1P20849 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL9A1P20849 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL9A1P20849 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
COL9A1P20849 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.43□□□□□ -1.38
COL9A1P20849 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 AC114947.2-201ENST00000565748 2125 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 AC027228.2-201ENST00000567141 2154 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 RNU1-134P-201ENST00000362935 165 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 RNU6-288P-201ENST00000363690 104 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 SNORA62-201ENST00000365493 153 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 RNU6-449P-201ENST00000383914 107 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 RNU1-46P-201ENST00000384425 164 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 MIR578-201ENST00000384828 96 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 MIR92A2-201ENST00000385299 75 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL9A1P20849 AL353621.1-201ENST00000418219 243 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC6.43□□□□□ -1.38
COL9A1P20849 MTCO1P39-201ENST00000426148 480 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AC091179.1-201ENST00000461606 579 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 OR7H2P-201ENST00000513483 306 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC6.43□□□□□ -1.38
COL9A1P20849 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 ATP5J2P6-201ENST00000565203 266 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AC005332.4-201ENST00000592752 579 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AL034351.1-201ENST00000605288 668 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AC004852.3-201ENST00000614131 326 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 HSP90AA4P-202ENST00000506915 2228 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.43□□□□□ -1.38
COL9A1P20849 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL9A1P20849 AL596244.1-201ENST00000567068 3779 ntBASIC6.43□□□□□ -1.38
COL9A1P20849 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL9A1P20849 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC6.43□□□□□ -1.38
COL9A1P20849 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.43□□□□□ -1.38
COL9A1P20849 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.43□□□□□ -1.38
COL9A1P20849 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 AC020978.8-201ENST00000571975 3022 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 AC000374.1-201ENST00000434698 1745 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 RNA5SP346-201ENST00000363541 121 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 RNU6-923P-201ENST00000364753 107 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 RNU6-1130P-201ENST00000365434 107 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 SNORA12.2-201ENST00000391040 156 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 CYB5AP4-201ENST00000396692 399 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 Y_RNA.623-201ENST00000411128 95 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 AL596266.1-201ENST00000448132 400 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.42□□□□□ -1.38
COL9A1P20849 RPL23AP65-201ENST00000475608 468 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC6.42□□□□□ -1.38
COL9A1P20849 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC6.42□□□□□ -1.38
COL9A1P20849 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.42□□□□□ -1.38
COL9A1P20849 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL9A1P20849 MIR4659A-201ENST00000580269 81 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.42□□□□□ -1.38
COL9A1P20849 AL359881.1-201ENST00000602916 267 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 AP000787.2-201ENST00000604432 568 ntBASIC6.42□□□□□ -1.38
COL9A1P20849 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC6.42□□□□□ -1.38
COL9A1P20849 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.42□□□□□ -1.38
COL9A1P20849 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms