Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHGA11Q9Y5H2 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHGA11Q9Y5H2 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
PCDHGA11Q9Y5H2 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.77□□□□□ -1.48
PCDHGA11Q9Y5H2 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RNU6-874P-201ENST00000362390 105 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RNA5SP110-201ENST00000362638 115 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 Y_RNA.480-201ENST00000384364 102 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RNU6-713P-201ENST00000384761 107 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RNU2-3P-201ENST00000410144 191 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RN7SKP86-201ENST00000410454 332 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC245096.1-201ENST00000413104 546 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RPS26P47-201ENST00000427219 348 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 ELOCP18-201ENST00000434209 337 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 GAPDHP59-201ENST00000435908 267 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RPL12P18-201ENST00000437175 325 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 NOTCH2P1-201ENST00000443481 624 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RNU6-953P-201ENST00000459154 107 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC092865.4-201ENST00000477936 615 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC090686.1-201ENST00000481577 749 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 RNU4-77P-201ENST00000516692 156 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AP006587.4-201ENST00000526053 529 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC016727.2-201ENST00000603988 621 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 Z98751.3-201ENST00000604447 521 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 IGHV3-29-201ENST00000604817 344 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC092747.4-201ENST00000620519 1861 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 AC008627.1-201ENST00000517511 1704 ntBASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.77□□□□□ -1.49
PCDHGA11Q9Y5H2 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 Y_RNA.288-201ENST00000364854 92 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC013442.1-201ENST00000397347 228 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC096664.2-201ENST00000411843 406 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 CYCSP10-201ENST00000417973 294 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC243428.1-201ENST00000421099 264 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 VTI1BP4-201ENST00000427516 527 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 RPSAP65-201ENST00000429660 595 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC016712.1-201ENST00000431088 378 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 RPL5P7-201ENST00000444235 813 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 RPS23P3-201ENST00000470993 430 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 TOMM22P4-201ENST00000511318 336 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 RNU6-120P-201ENST00000516077 103 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 RN7SKP60-201ENST00000516985 239 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC069113.1-201ENST00000517763 267 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC090022.1-201ENST00000546569 311 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 SUB1P3-201ENST00000564581 315 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 uc_338.26-201ENST00000612659 160 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 AC020633.1-201ENST00000468439 2247 ntBASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.76□□□□□ -1.49
PCDHGA11Q9Y5H2 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
PCDHGA11Q9Y5H2 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms