Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MTCO3P16-201ENST00000454456 754 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 CENPBD1P1-201ENST00000464061 469 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXC9P31274 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXC9P31274 FABP5P12-201ENST00000515543 389 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 SNORD116-26-201ENST00000516006 96 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 AC087808.1-201ENST00000520501 361 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXC9P31274 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXC9P31274 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXC9P31274 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXC9P31274 EIF5A2P1-201ENST00000564027 460 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 AC022662.1-201ENST00000580252 331 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXC9P31274 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXC9P31274 NIFKP6-201ENST00000598115 845 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXC9P31274 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC9P31274 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC9P31274 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC9P31274 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 RNU6-83P-201ENST00000384568 112 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 RPL23AP47-201ENST00000408017 460 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 RN7SKP56-201ENST00000410513 331 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 RNU2-42P-201ENST00000410697 113 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 RPL35AP12-201ENST00000425362 338 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AL138785.1-201ENST00000425821 331 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 AC105402.2-201ENST00000438503 358 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AC107083.1-201ENST00000439643 279 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 HMGB3P21-201ENST00000452483 547 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 AC087312.1-201ENST00000471411 480 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC9P31274 MIR2276-201ENST00000516886 89 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC9P31274 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXC9P31274 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 AC022080.3-201ENST00000544433 482 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AC023050.2-201ENST00000544968 387 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC9P31274 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC9P31274 HMGB1P50-201ENST00000605814 607 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AP006248.2-201ENST00000623309 592 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXC9P31274 AC244205.2-202ENST00000635781 342 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 AC000123.3-201ENST00000624029 4975 ntBASIC4.27□□□□□ -1.73
HOXC9P31274 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC9P31274 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC9P31274 AC109315.1-201ENST00000584143 1347 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC9P31274 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
HOXC9P31274 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC9P31274 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC9P31274 OR52B1P-201ENST00000316506 909 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 RNU6-1066P-201ENST00000363573 105 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 RNU6-444P-201ENST00000383988 108 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 RNU6-1293P-201ENST00000384077 107 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC9P31274 IPMKP1-201ENST00000425988 855 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 RPP40P1-201ENST00000426762 456 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 MTCYBP31-201ENST00000438855 1122 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC025750.2-201ENST00000442609 450 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC9P31274 UBE2DNL-203ENST00000474922 222 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC9P31274 RPL23AP94-201ENST00000512518 302 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 RNU6-488P-201ENST00000515918 99 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXC9P31274 AC010198.2-201ENST00000550612 259 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC022069.1-201ENST00000582910 658 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 MIR4298-201ENST00000584380 73 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC068313.1-201ENST00000604028 1008 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 AC080013.3-201ENST00000606839 578 ntBASIC4.26□□□□□ -1.73
HOXC9P31274 uc_338.25-201ENST00000613756 156 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms