Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX1P28360 RNU6-397P-201ENST00000516226 104 ntBASIC5.6□□□□□ -1.51
MSX1P28360 RNU5B-3P-201ENST00000516601 115 ntBASIC5.6□□□□□ -1.51
MSX1P28360 AC012339.2-201ENST00000523996 453 ntBASIC5.6□□□□□ -1.51
MSX1P28360 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX1P28360 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.6□□□□□ -1.51
MSX1P28360 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.6□□□□□ -1.51
MSX1P28360 AC093227.2-201ENST00000589357 285 ntBASIC5.6□□□□□ -1.51
MSX1P28360 AC020916.2-201ENST00000591242 360 ntBASIC5.6□□□□□ -1.51
MSX1P28360 VN1R91P-201ENST00000594377 169 ntBASIC5.6□□□□□ -1.51
MSX1P28360 MIR6864-201ENST00000617935 70 ntBASIC5.6□□□□□ -1.51
MSX1P28360 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.6□□□□□ -1.51
MSX1P28360 AC129915.3-201ENST00000634128 948 ntBASIC5.6□□□□□ -1.51
MSX1P28360 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 AC020633.1-201ENST00000468439 2247 ntBASIC5.6□□□□□ -1.51
MSX1P28360 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
MSX1P28360 AL031119.1-201ENST00000404707 1879 ntBASIC5.6□□□□□ -1.51
MSX1P28360 AC232271.1-201ENST00000602455 2715 ntBASIC5.6□□□□□ -1.51
MSX1P28360 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX1P28360 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX1P28360 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
MSX1P28360 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
MSX1P28360 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 AL355834.1-201ENST00000556602 3965 ntBASIC5.59□□□□□ -1.51
MSX1P28360 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX1P28360 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX1P28360 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 RNU105B-201ENST00000364478 208 ntBASIC5.59□□□□□ -1.51
MSX1P28360 RNU6-596P-201ENST00000365395 98 ntBASIC5.59□□□□□ -1.51
MSX1P28360 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
MSX1P28360 Y_RNA.539-201ENST00000384635 107 ntBASIC5.59□□□□□ -1.51
MSX1P28360 UBE2FP1-201ENST00000416536 447 ntBASIC5.59□□□□□ -1.51
MSX1P28360 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX1P28360 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 MRPS21P2-201ENST00000424704 264 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AL353997.1-201ENST00000432936 108 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AC004383.1-201ENST00000438135 289 ntBASIC5.59□□□□□ -1.51
MSX1P28360 OR2AQ1P-201ENST00000451972 200 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AC092647.2-201ENST00000452998 253 ntBASIC5.59□□□□□ -1.51
MSX1P28360 PPIAP7-201ENST00000454070 489 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.59□□□□□ -1.51
MSX1P28360 AC098847.1-201ENST00000473094 348 ntBASIC5.59□□□□□ -1.51
MSX1P28360 RN7SL174P-201ENST00000475578 289 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AP000926.1-201ENST00000479573 241 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC5.59□□□□□ -1.51
MSX1P28360 AP000620.1-201ENST00000527147 504 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX1P28360 AC015720.2-201ENST00000567709 334 ntBASIC5.59□□□□□ -1.51
MSX1P28360 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.59□□□□□ -1.51
MSX1P28360 AC064801.1-201ENST00000612025 407 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AC109309.2-201ENST00000612597 332 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AL159153.1-201ENST00000619688 317 ntBASIC5.59□□□□□ -1.51
MSX1P28360 MIR6886-201ENST00000619864 61 ntBASIC5.59□□□□□ -1.51
MSX1P28360 AC007998.5-201ENST00000622938 237 ntBASIC5.59□□□□□ -1.51
MSX1P28360 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSX1P28360 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.59□□□□□ -1.51
MSX1P28360 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
MSX1P28360 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.59□□□□□ -1.52
MSX1P28360 AL137141.1-201ENST00000624622 4836 ntBASIC5.59□□□□□ -1.52
MSX1P28360 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
MSX1P28360 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
MSX1P28360 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
MSX1P28360 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
MSX1P28360 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 AC092079.1-201ENST00000558620 1985 ntBASIC5.58□□□□□ -1.52
MSX1P28360 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.58□□□□□ -1.52
MSX1P28360 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.58□□□□□ -1.52
MSX1P28360 AC020656.2-201ENST00000613291 5309 ntBASIC5.58□□□□□ -1.52
MSX1P28360 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSX1P28360 AC138393.1-203ENST00000327086 343 ntBASIC5.58□□□□□ -1.52
MSX1P28360 RNY3P11-201ENST00000364153 102 ntBASIC5.58□□□□□ -1.52
MSX1P28360 RN7SKP292-201ENST00000365522 317 ntBASIC5.58□□□□□ -1.52
MSX1P28360 RNU6-187P-201ENST00000384139 106 ntBASIC5.58□□□□□ -1.52
MSX1P28360 MIR130B-202ENST00000385018 82 ntBASIC5.58□□□□□ -1.52
MSX1P28360 AL139039.1-201ENST00000401900 692 ntBASIC5.58□□□□□ -1.52
MSX1P28360 SNRPEP6-201ENST00000407465 277 ntBASIC5.58□□□□□ -1.52
MSX1P28360 MORN2-203ENST00000409131 544 ntTSL 5 BASIC5.58□□□□□ -1.52
MSX1P28360 RNU6-174P-201ENST00000410406 106 ntBASIC5.58□□□□□ -1.52
MSX1P28360 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 140.9 ms