Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.74□□□□□ -1.81
MSH3P20585 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.74□□□□□ -1.81
MSH3P20585 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.74□□□□□ -1.81
MSH3P20585 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.74□□□□□ -1.81
MSH3P20585 AC087499.8-201ENST00000578406 226 ntBASIC3.74□□□□□ -1.81
MSH3P20585 MIR3915-201ENST00000578518 97 ntBASIC3.74□□□□□ -1.81
MSH3P20585 AC040904.1-201ENST00000590850 223 ntBASIC3.74□□□□□ -1.81
MSH3P20585 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.74□□□□□ -1.81
MSH3P20585 AL022161.1-201ENST00000604390 213 ntBASIC3.74□□□□□ -1.81
MSH3P20585 AC245008.1-201ENST00000608123 476 ntBASIC3.74□□□□□ -1.81
MSH3P20585 AC092184.1-201ENST00000625042 715 ntBASIC3.74□□□□□ -1.81
MSH3P20585 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH3P20585 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.74□□□□□ -1.81
MSH3P20585 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH3P20585 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
MSH3P20585 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.74□□□□□ -1.81
MSH3P20585 ZNF37BP-203ENST00000452306 1352 ntBASIC3.74□□□□□ -1.81
MSH3P20585 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.74□□□□□ -1.81
MSH3P20585 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.74□□□□□ -1.81
MSH3P20585 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
MSH3P20585 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
MSH3P20585 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.73□□□□□ -1.81
MSH3P20585 AC024560.2-201ENST00000507981 1497 ntBASIC3.73□□□□□ -1.81
MSH3P20585 ZNF33CP-201ENST00000432492 2030 ntBASIC3.73□□□□□ -1.81
MSH3P20585 OR5BR1P-201ENST00000524992 1330 ntBASIC3.73□□□□□ -1.81
MSH3P20585 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.73□□□□□ -1.81
MSH3P20585 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 RNU6-1122P-201ENST00000384449 107 ntBASIC3.73□□□□□ -1.81
MSH3P20585 MIR153-1-201ENST00000384914 90 ntBASIC3.73□□□□□ -1.81
MSH3P20585 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 AL590704.1-201ENST00000402856 794 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC073264.1-201ENST00000411508 416 ntBASIC3.73□□□□□ -1.81
MSH3P20585 USP9YP33-201ENST00000412220 421 ntBASIC3.73□□□□□ -1.81
MSH3P20585 RPL31P45-201ENST00000419532 356 ntBASIC3.73□□□□□ -1.81
MSH3P20585 RPS15AP40-201ENST00000419621 391 ntBASIC3.73□□□□□ -1.81
MSH3P20585 RPL21P109-201ENST00000422213 475 ntBASIC3.73□□□□□ -1.81
MSH3P20585 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
MSH3P20585 AC017083.1-201ENST00000428093 483 ntBASIC3.73□□□□□ -1.81
MSH3P20585 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 BMS1P19-201ENST00000433925 393 ntBASIC3.73□□□□□ -1.81
MSH3P20585 USP9YP35-201ENST00000435696 412 ntBASIC3.73□□□□□ -1.81
MSH3P20585 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 TRGVB-201ENST00000453257 471 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 MTCO3P2-201ENST00000457365 171 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC010301.1-201ENST00000473936 355 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC087879.1-201ENST00000474343 374 ntBASIC3.73□□□□□ -1.81
MSH3P20585 TRBV12-2-201ENST00000489763 344 ntBASIC3.73□□□□□ -1.81
MSH3P20585 NIPA2P2-201ENST00000496376 1083 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC104685.1-201ENST00000502445 371 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC108078.3-201ENST00000502633 489 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.73□□□□□ -1.81
MSH3P20585 MTCYBP37-201ENST00000510642 1133 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.73□□□□□ -1.81
MSH3P20585 RNA5SP208-201ENST00000516156 78 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.73□□□□□ -1.81
MSH3P20585 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.73□□□□□ -1.81
MSH3P20585 AC007954.1-201ENST00000554198 494 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.73□□□□□ -1.81
MSH3P20585 MTCYBP28-201ENST00000566728 1132 ntBASIC3.73□□□□□ -1.81
MSH3P20585 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.73□□□□□ -1.81
MSH3P20585 AC093227.2-201ENST00000589357 285 ntBASIC3.73□□□□□ -1.81
MSH3P20585 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.73□□□□□ -1.81
MSH3P20585 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 AL034351.1-201ENST00000605288 668 ntBASIC3.73□□□□□ -1.81
MSH3P20585 SNORA62.6-201ENST00000606322 83 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC008083.4-201ENST00000615076 444 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC091931.1-201ENST00000623488 728 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AF246928.1-201ENST00000623768 87 ntBASIC3.73□□□□□ -1.81
MSH3P20585 AC068137.4-201ENST00000638485 296 ntBASIC3.73□□□□□ -1.81
MSH3P20585 FAM157B-203ENST00000639350 358 ntBASIC3.73□□□□□ -1.81
MSH3P20585 MTND5P24-201ENST00000438892 1767 ntBASIC3.73□□□□□ -1.81
MSH3P20585 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 ELL2P3-201ENST00000457883 1602 ntBASIC3.73□□□□□ -1.81
MSH3P20585 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH3P20585 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH3P20585 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
MSH3P20585 CEP170P1-201ENST00000502249 4587 ntBASIC3.72□□□□□ -1.81
MSH3P20585 RNU6-500P-201ENST00000362349 107 ntBASIC3.72□□□□□ -1.81
MSH3P20585 Y_RNA.126-201ENST00000363382 111 ntBASIC3.72□□□□□ -1.81
MSH3P20585 SNORD6-201ENST00000365444 73 ntBASIC3.72□□□□□ -1.81
MSH3P20585 RNU6-253P-201ENST00000384730 105 ntBASIC3.72□□□□□ -1.81
MSH3P20585 MIR124-3-201ENST00000384866 87 ntBASIC3.72□□□□□ -1.81
MSH3P20585 RNA5SP424-201ENST00000390988 115 ntBASIC3.72□□□□□ -1.81
MSH3P20585 CYCSP45-201ENST00000402289 315 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AL031577.2-201ENST00000404133 280 ntBASIC3.72□□□□□ -1.81
MSH3P20585 AL021407.1-201ENST00000404531 386 ntBASIC3.72□□□□□ -1.81
MSH3P20585 HSPE1P8-201ENST00000406997 288 ntBASIC3.72□□□□□ -1.81
MSH3P20585 RN7SKP202-201ENST00000410439 330 ntBASIC3.72□□□□□ -1.81
MSH3P20585 RN7SKP159-201ENST00000410657 292 ntBASIC3.72□□□□□ -1.81
MSH3P20585 MTCYBP38-201ENST00000417160 1123 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms