Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MRPL42P2-201ENST00000403169 426 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 PPIAP31-201ENST00000405422 495 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 RNU2-43P-201ENST00000410306 190 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 RPS3AP3-201ENST00000411933 242 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 DLGAP5P1-201ENST00000430307 464 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 RPL17P49-201ENST00000443728 411 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 RN7SL98P-201ENST00000462271 300 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC020890.1-201ENST00000491837 504 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 MLLT10P2-201ENST00000506434 249 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC005921.1-201ENST00000510589 286 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC123904.2-201ENST00000548059 300 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC022884.2-201ENST00000578535 580 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 MIR3682-201ENST00000581338 84 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC004908.2-201ENST00000609090 574 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AC015967.1-201ENST00000619893 476 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 MIR492-201ENST00000638676 116 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-1119P-201ENST00000384349 108 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 SSXP9-201ENST00000417503 292 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AL589823.1-201ENST00000429577 183 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 RPL23AP83-201ENST00000434984 473 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 RPL35AP22-201ENST00000436855 335 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AL022238.1-201ENST00000442557 355 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 TPT1P14-201ENST00000448018 505 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 RPS24P6-201ENST00000452670 400 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC007967.1-201ENST00000455422 1159 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 NDUFB4P2-201ENST00000509515 391 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC004062.1-201ENST00000509926 645 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC109464.2-201ENST00000510242 943 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC006270.2-201ENST00000578523 652 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 COX6CP3-201ENST00000580869 223 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 MIR3944-201ENST00000581277 108 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC006566.1-201ENST00000608943 513 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AL355472.4-201ENST00000610233 626 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC090970.3-201ENST00000612566 866 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 MIR6130-201ENST00000619419 109 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AC099654.13-201ENST00000639774 207 ntBASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC9Q9Y3X0 AL133412.1-201ENST00000380194 2992 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 CARF-203ENST00000414439 2099 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 MIR383-201ENST00000362257 73 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-432P-201ENST00000384196 109 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 SNORA5.1-201ENST00000384275 131 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 CYCSP19-201ENST00000411715 316 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 FTH1P1-201ENST00000437933 532 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 snoU13.24-201ENST00000458998 104 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 RPL7P24-201ENST00000493052 752 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 HMGB1P22-201ENST00000505315 124 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 KLHL2P1-201ENST00000508691 521 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-1073P-201ENST00000517182 106 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AL133271.1-201ENST00000538229 291 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC079089.3-201ENST00000603094 673 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AL590282.1-201ENST00000610379 1136 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms