Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 AC005300.1-201ENST00000428401 373 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AL359073.1-201ENST00000448036 403 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AL034418.1-201ENST00000448675 860 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 RPS4XP10-201ENST00000465034 731 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC091153.1-201ENST00000466297 402 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC108729.2-201ENST00000476543 840 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 OR5G4P-201ENST00000525251 760 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC034105.3-201ENST00000565294 442 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 SNORD84-203ENST00000584275 78 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 VN1R88P-201ENST00000596787 292 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 BX323046.1-201ENST00000610145 535 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC096586.1-201ENST00000610267 561 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 VIS1.1-201ENST00000610517 203 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC090897.3-201ENST00000636973 1157 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 AC108206.1-201ENST00000570186 4159 ntBASIC2.82□□□□□ -1.96
VAPAQ9P0L0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VAPAQ9P0L0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 TAF9BP1-201ENST00000396646 746 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 RNU4-47P-201ENST00000410876 114 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL390023.1-201ENST00000428836 262 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL691517.1-201ENST00000440833 1235 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 Z95327.1-201ENST00000446082 482 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 RPL36AP33-201ENST00000450395 310 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC104073.1-201ENST00000451988 151 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 RPS29P2-201ENST00000479278 136 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC105914.1-201ENST00000511798 226 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 SNORD59.2-201ENST00000516873 68 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC022690.1-201ENST00000526681 550 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 BDH2P1-201ENST00000602288 736 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL355812.1-201ENST00000603215 216 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC005229.3-201ENST00000603438 323 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL450270.1-201ENST00000606160 391 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC131902.3-201ENST00000611767 581 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL020991.1-201ENST00000612314 373 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 MTND2P41-201ENST00000637599 773 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AC025263.3-201ENST00000622965 1396 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 AL035425.3-201ENST00000564206 4996 ntBASIC2.81□□□□□ -1.96
VAPAQ9P0L0 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VAPAQ9P0L0 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AP002907.1-201ENST00000606361 1430 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 MTND5P31-201ENST00000419366 1374 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 SNORA54-201ENST00000384281 123 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 MTND4LP20-201ENST00000402379 270 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 RNU6-1077P-201ENST00000410506 102 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 RNU6-77P-201ENST00000410554 91 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AL035410.1-201ENST00000427409 427 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 HMGN3P1-201ENST00000453847 193 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AL136126.1-201ENST00000473603 402 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 GAPDHP39-201ENST00000481866 979 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 PRELID3BP6-201ENST00000503839 571 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 ARL4AP2-201ENST00000507378 601 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 OR8K4P-201ENST00000534608 872 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 SETP2-201ENST00000553886 926 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 BNIP3P5-201ENST00000562290 498 ntBASIC2.8□□□□□ -1.96
VAPAQ9P0L0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC2.8□□□□□ -1.96
VAPAQ9P0L0 AL627309.6-201ENST00000606857 840 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms