Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL139811.1-201ENST00000424779 2299 ntBASIC4.89□□□□□ -1.63
NUP88Q99567 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
NUP88Q99567 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.89□□□□□ -1.63
NUP88Q99567 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
NUP88Q99567 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.89□□□□□ -1.63
NUP88Q99567 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
NUP88Q99567 RNU6-744P-201ENST00000365557 107 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 RNU6-1316P-201ENST00000384242 108 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 RNU6-809P-201ENST00000384461 107 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 RN7SKP27-201ENST00000410684 333 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 OFD1P18Y-201ENST00000420889 959 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AC005517.2-201ENST00000424673 553 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.88□□□□□ -1.63
NUP88Q99567 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.88□□□□□ -1.63
NUP88Q99567 RPL23AP33-201ENST00000442301 452 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 snoU13.8-201ENST00000458890 104 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 RPS4XP10-201ENST00000465034 731 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.88□□□□□ -1.63
NUP88Q99567 RN7SKP116-201ENST00000516902 319 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.88□□□□□ -1.63
NUP88Q99567 OR4P1P-201ENST00000530808 1136 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AP002453.2-201ENST00000533503 320 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 PDCD5P1-201ENST00000543528 309 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 AC012213.3-201ENST00000577199 777 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 AC090615.1-201ENST00000577519 154 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 AP000254.1-201ENST00000609934 520 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 AC006329.2-201ENST00000611491 394 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 AC010678.1-201ENST00000614118 713 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 MIR6875-201ENST00000617506 72 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 AC098679.4-201ENST00000624241 654 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 BMS1P21-201ENST00000634565 365 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
NUP88Q99567 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
NUP88Q99567 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.88□□□□□ -1.63
NUP88Q99567 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.88□□□□□ -1.63
NUP88Q99567 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.87□□□□□ -1.63
NUP88Q99567 FAM91A3P-201ENST00000456826 2544 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
NUP88Q99567 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP88Q99567 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
NUP88Q99567 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
NUP88Q99567 FGF7P2-201ENST00000332473 296 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 Y_RNA.97-201ENST00000363094 102 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RNU6-853P-201ENST00000364306 107 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RNU1-64P-201ENST00000365443 163 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP88Q99567 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP88Q99567 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC4.87□□□□□ -1.63
NUP88Q99567 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 SKP1P1-201ENST00000438081 489 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RPL21P89-201ENST00000444021 467 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 AL590399.6-201ENST00000446396 307 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 ST13P20-201ENST00000447996 1065 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RPL5P32-201ENST00000454085 879 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 CFTRP1-201ENST00000456646 183 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RNA5SP269-201ENST00000459032 137 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RPL23AP2-201ENST00000471227 466 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RPL21P103-201ENST00000479921 488 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.87□□□□□ -1.63
NUP88Q99567 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 AC093853.1-201ENST00000515689 483 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 RNA5SP360-201ENST00000516555 118 ntBASIC4.87□□□□□ -1.63
NUP88Q99567 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.87□□□□□ -1.63
NUP88Q99567 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 156.9 ms