Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC008638.3-201ENST00000603341 463 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC073648.5-201ENST00000603502 305 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC104010.1-201ENST00000616889 150 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC073968.1-201ENST00000618594 637 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 U3.53-201ENST00000628922 216 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 ZNF137P-201ENST00000456718 1920 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC007390.2-201ENST00000606229 3803 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RNU6-343P-201ENST00000364709 104 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RNA5SP22-201ENST00000365393 109 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RNU1-63P-201ENST00000383902 164 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 MTCYBP36-201ENST00000404146 440 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RNU2-66P-201ENST00000410650 161 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RPS12P10-201ENST00000427031 377 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC011998.1-201ENST00000433403 117 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 LSM1P1-201ENST00000438629 273 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 SNRPFP4-201ENST00000456366 242 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 PABPC1P3-201ENST00000469174 459 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC106872.3-201ENST00000495104 446 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 HMGB1P21-201ENST00000502313 581 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC025445.1-201ENST00000502728 300 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RNF138P1-201ENST00000502765 546 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RPL37P25-201ENST00000507308 276 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL117351.2-201ENST00000513571 157 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC025881.1-201ENST00000518851 512 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 IGLV3-26-201ENST00000520756 302 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC105129.1-201ENST00000560250 297 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC034105.4-201ENST00000568304 277 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 MIR5186-201ENST00000577504 120 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AP001180.3-201ENST00000582221 145 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC025946.2-201ENST00000603398 234 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC015871.2-201ENST00000603605 948 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RPL23AP92-201ENST00000603609 255 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC245389.1-201ENST00000605141 529 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC090186.1-201ENST00000605991 572 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC113194.1-201ENST00000606037 500 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC027807.2-201ENST00000616099 408 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC099842.1-201ENST00000619919 596 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 NXPH1-205ENST00000602349 1953 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 MFSD8-242ENST00000641690 4199 ntBASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS4AQ9UN37 AL022578.1-201ENST00000439330 1433 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 OR11H4-201ENST00000315409 1082 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 RNU5E-5P-201ENST00000365379 116 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 RNU6-769P-201ENST00000384407 104 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 RNU6-248P-201ENST00000410720 107 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 AC109780.2-201ENST00000413467 845 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 FNDC3CP-201ENST00000420795 1155 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 AC010975.2-201ENST00000427781 588 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 GDI2P2-201ENST00000445131 608 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 AL136126.1-201ENST00000473603 402 ntBASIC4.29□□□□□ -1.72
VPS4AQ9UN37 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS4AQ9UN37 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms