Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ST13P14-201ENST00000474095 734 ntBASIC2.43□□□□□ -2.02
TTC28Q96AY4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.43□□□□□ -2.02
TTC28Q96AY4 AC021269.2-201ENST00000532318 330 ntBASIC2.43□□□□□ -2.02
TTC28Q96AY4 ARL2BPP2-201ENST00000550907 489 ntBASIC2.43□□□□□ -2.02
TTC28Q96AY4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.43□□□□□ -2.02
TTC28Q96AY4 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC2.42□□□□□ -2.02
TTC28Q96AY4 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 RNA5SP274-201ENST00000410484 108 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.42□□□□□ -2.02
TTC28Q96AY4 AC093392.2-201ENST00000450682 337 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 SETP4-201ENST00000455717 868 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 RN7SL442P-201ENST00000473804 320 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AL163540.1-201ENST00000485382 386 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AC108078.3-201ENST00000502633 489 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 OR5H3P-201ENST00000502817 919 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 HNRNPKP5-201ENST00000515300 253 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 AC061975.8-201ENST00000587058 721 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AC067747.1-201ENST00000608026 250 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.42□□□□□ -2.02
TTC28Q96AY4 RNA5SP270-201ENST00000411361 118 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AP1B1P2-201ENST00000416196 106 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC2.42□□□□□ -2.02
TTC28Q96AY4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.42□□□□□ -2.02
TTC28Q96AY4 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.42□□□□□ -2.02
TTC28Q96AY4 CKS1BP7-201ENST00000522230 235 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 AL162233.1-201ENST00000620014 944 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
TTC28Q96AY4 SAGE4P-201ENST00000442271 3381 ntBASIC2.42□□□□□ -2.02
TTC28Q96AY4 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
TTC28Q96AY4 AC020633.1-201ENST00000468439 2247 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
TTC28Q96AY4 U3.6-201ENST00000363622 211 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 MIR93-201ENST00000385024 80 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 AC022795.1-201ENST00000473808 480 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
TTC28Q96AY4 PSMA3P-201ENST00000555485 635 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 VN1R80P-201ENST00000597126 338 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 RMST_2.1-201ENST00000617263 136 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 MIR219B-201ENST00000637023 88 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.41□□□□□ -2.02
TTC28Q96AY4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
TTC28Q96AY4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.41□□□□□ -2.02
TTC28Q96AY4 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.41□□□□□ -2.02
TTC28Q96AY4 RPS15AP12-201ENST00000419498 388 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 AC072039.1-201ENST00000477611 581 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 SYT14P1-201ENST00000481459 721 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.41□□□□□ -2.02
TTC28Q96AY4 IGLV3-17-201ENST00000519099 244 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2.41□□□□□ -2.02
TTC28Q96AY4 AL022099.1-201ENST00000604551 712 ntBASIC2.41□□□□□ -2.02
TTC28Q96AY4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
TTC28Q96AY4 MTND5P28-201ENST00000438005 1594 ntBASIC2.4□□□□□ -2.02
TTC28Q96AY4 EIF5P1-201ENST00000400019 1231 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 MTND2P11-201ENST00000423638 648 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 RPL12P18-201ENST00000437175 325 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 KCTD9P5-201ENST00000504141 1170 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
TTC28Q96AY4 Z99496.1-201ENST00000469424 1477 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 TTC39DP-201ENST00000416781 1688 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TTC28Q96AY4 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
TTC28Q96AY4 AC107021.2-201ENST00000567714 2095 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
TTC28Q96AY4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.03
TTC28Q96AY4 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 NDUFB4P6-201ENST00000436819 366 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 RPL23AP58-201ENST00000440453 469 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 AL592437.1-201ENST00000443781 492 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 AC092991.1-201ENST00000477176 376 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 HMGB1P1-201ENST00000522557 636 ntBASIC2.4□□□□□ -2.03
TTC28Q96AY4 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC2.4□□□□□ -2.03
TTC28Q96AY4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
TTC28Q96AY4 NR1H5P-201ENST00000452683 1377 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TTC28Q96AY4 AC092435.3-201ENST00000565538 3654 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 RNA5SP39-201ENST00000411245 120 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 NPM1P29-201ENST00000483112 803 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 AC011270.1-201ENST00000558606 583 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 HMGN2P47-201ENST00000559378 272 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
TTC28Q96AY4 SNORD74.4-201ENST00000364129 80 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 RN7SKP247-201ENST00000411094 308 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.39□□□□□ -2.03
TTC28Q96AY4 Z73417.1-201ENST00000447373 778 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 AC007395.1-201ENST00000451333 677 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 MLLT10P2-201ENST00000506434 249 ntBASIC2.39□□□□□ -2.03
TTC28Q96AY4 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms