Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 DNAJC8P1-201ENST00000554535 372 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 MIR3158-1-201ENST00000583596 81 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 CCDC58P3-201ENST00000590792 430 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RPAP2P1-201ENST00000603626 1168 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC106791.2-201ENST00000604680 391 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC106900.2-201ENST00000604994 317 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC005014.3-201ENST00000605985 190 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AL450489.1-201ENST00000612071 468 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC006133.1-201ENST00000617106 264 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AL353748.2-201ENST00000622148 471 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 MTCO1P23-201ENST00000415223 1526 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 FAM35CP-201ENST00000554755 2470 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 SRP72P2-201ENST00000344851 1979 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 MAPK10-322ENST00000641485 4530 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AL645937.1-201ENST00000641739 1652 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-1066P-201ENST00000363573 105 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RNA5SP97-201ENST00000365006 84 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-468P-201ENST00000384003 109 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AL035405.1-201ENST00000400795 710 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AL136372.1-201ENST00000403060 228 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 ZNF602P-201ENST00000405929 924 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 MTCYBP15-201ENST00000433123 1127 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RPS29P7-201ENST00000439662 171 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AC006539.3-201ENST00000454258 129 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 RFC5P1-201ENST00000454419 874 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 ACTG1P13-201ENST00000486987 1043 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 MED28P6-201ENST00000558776 231 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 TMF1P1-201ENST00000576058 373 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AC053481.3-201ENST00000577881 843 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AP002826.1-201ENST00000608835 315 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AP005229.2-201ENST00000609980 697 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 MIR6075-201ENST00000620782 95 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 AC233263.6-201ENST00000631132 1963 ntBASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
ZNF540Q8NDQ6 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.4□□□□□ -1.86
ZNF540Q8NDQ6 MFSD8-236ENST00000641509 4050 ntBASIC3.4□□□□□ -1.86
ZNF540Q8NDQ6 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-1027P-201ENST00000383998 107 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 ATP5F1P3-201ENST00000397213 657 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 U3.42-201ENST00000408746 214 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 RNU4-6P-201ENST00000410804 122 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AL136133.1-201ENST00000413694 376 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC092634.6-201ENST00000418558 192 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 MTCO3P1-205ENST00000422088 832 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 RPL31P12-201ENST00000422587 358 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 UBE2D3P3-201ENST00000426992 425 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 EZH2P1-201ENST00000431167 291 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC092393.1-201ENST00000439625 742 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 OR6K5P-201ENST00000447050 945 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC006480.1-201ENST00000449887 378 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC093392.2-201ENST00000450682 337 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC010468.1-201ENST00000461022 817 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 RN7SL542P-201ENST00000467147 294 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 SNORA67.7-201ENST00000516664 135 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC006960.3-201ENST00000561845 705 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 MTCO3P24-201ENST00000572729 782 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 MIR4429-201ENST00000580105 73 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms