Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC109925.1-201ENST00000478069 331 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 RPS29P2-201ENST00000479278 136 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC108157.1-201ENST00000510511 539 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 RNU1-61P-201ENST00000516107 151 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 HAUS1P3-201ENST00000523909 662 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 SERPINE4P-201ENST00000554978 281 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC107954.1-201ENST00000565906 727 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 MTCYBP28-201ENST00000566728 1132 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC012182.1-201ENST00000570133 895 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 CBX3P2-202ENST00000583365 535 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 BNIP3P19-201ENST00000605397 577 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AL627309.6-201ENST00000606857 840 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 LINC00216-201ENST00000623548 1126 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 AC006963.1-201ENST00000624003 1052 ntBASIC2.32□□□□□ -2.04
HLA-DMBP28068 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.32□□□□□ -2.04
HLA-DMBP28068 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HLA-DMBP28068 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 RNA5SP374-201ENST00000362939 125 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 DEFB109C-201ENST00000382575 264 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 DEFB109B-201ENST00000382656 264 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 RNU6-1181P-201ENST00000384191 106 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 MIR128-1-201ENST00000384921 82 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 SNORA48.2-201ENST00000390926 124 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 SFR1P1-201ENST00000403720 688 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 TANK-206ENST00000406287 875 ntTSL 5 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 RNA5SP129-201ENST00000410276 118 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 VTA1P1-201ENST00000414044 866 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 HSPE1P1-201ENST00000421494 318 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AL445528.1-201ENST00000426330 420 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC091390.3-201ENST00000426478 338 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HLA-DMBP28068 MTCO1P57-201ENST00000432182 261 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC097499.1-201ENST00000444277 208 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AL671855.1-201ENST00000446875 1203 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC016696.1-201ENST00000446949 318 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 RPS3AP43-201ENST00000479743 781 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 MIR5004-201ENST00000579078 107 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 OR4G1P-201ENST00000588632 938 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AL162274.2-201ENST00000614406 332 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AC007318.2-201ENST00000620999 243 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 U6.107-201ENST00000637108 79 ntBASIC2.31□□□□□ -2.04
HLA-DMBP28068 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
HLA-DMBP28068 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HLA-DMBP28068 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HLA-DMBP28068 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HLA-DMBP28068 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HLA-DMBP28068 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AL121972.1-201ENST00000402023 252 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 ELOCP23-201ENST00000452014 332 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 MRPL35P4-201ENST00000453682 566 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 OR6K1P-201ENST00000456766 971 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 HMGN2P13-201ENST00000476476 274 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AP004217.1-201ENST00000480579 346 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 RN7SL633P-201ENST00000488974 297 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC090543.1-201ENST00000492168 485 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC008885.2-201ENST00000509506 930 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 RNA5SP468-201ENST00000516782 93 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 HMGB1P46-201ENST00000520062 610 ntBASIC2.3□□□□□ -2.04
HLA-DMBP28068 AC010306.1-201ENST00000523223 1117 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms