Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AP000843.1-201ENST00000624880 701 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC006065.6-201ENST00000625201 545 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC068724.3-201ENST00000625906 87 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 PISRT1-201ENST00000626175 531 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC110994.2-201ENST00000635481 492 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 Z95327.2-201ENST00000414579 1873 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 NUP58P1-201ENST00000502546 1738 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 U8.3-201ENST00000363321 132 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 RPL17P50-201ENST00000396131 546 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AL356421.1-201ENST00000403255 413 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 FCF1P10-201ENST00000407590 479 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AL138785.1-201ENST00000425821 331 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AC008065.1-201ENST00000428525 348 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 UBE2V1P8-201ENST00000437166 265 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 RPL17P49-201ENST00000443728 411 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 NUTF2P3-201ENST00000448540 384 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AP001992.1-205ENST00000462248 379 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 MTND1P3-201ENST00000484956 952 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 RNU2-46P-201ENST00000517038 113 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 IGLVIV-53-201ENST00000520107 367 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 MTCYBP41-201ENST00000528913 1123 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 MIR3682-201ENST00000581338 84 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 MIR4472-2-201ENST00000582069 67 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 ARF4P1-201ENST00000605447 541 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AC020634.1-201ENST00000608701 549 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 AC136475.10-201ENST00000620253 385 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 CPHL1P-201ENST00000461341 3407 ntBASIC4.67□□□□□ -1.66
TDP1Q9NUW8 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
TDP1Q9NUW8 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 LINC00622-201ENST00000562811 1570 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 OR5P1P-201ENST00000299512 925 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RNA5SP479-201ENST00000364858 117 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 Y_RNA.554-201ENST00000384672 102 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 BX295541.1-201ENST00000417774 250 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 NANOGP6-201ENST00000429190 847 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC012671.1-201ENST00000451912 203 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RPS20P32-201ENST00000456044 356 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RPS7P7-201ENST00000463499 571 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RPL37P6-202ENST00000464216 403 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RN7SL41P-201ENST00000476144 297 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 RNU6-314P-201ENST00000516574 104 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC124947.2-202ENST00000552735 133 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AL109766.1-201ENST00000555080 552 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AL133241.1-201ENST00000556832 487 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.66□□□□□ -1.66
TDP1Q9NUW8 IPO5P1-202ENST00000600039 287 ntBASIC4.66□□□□□ -1.66
TDP1Q9NUW8 CKS1BP3-201ENST00000600888 237 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms