Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS35Q96QK1 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 RNU6-251P-201ENST00000363235 104 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 RNU6-730P-201ENST00000383954 104 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 SNORD17-201ENST00000390930 237 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 RSL24D1P1-201ENST00000404972 493 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AL133264.1-201ENST00000407157 562 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AL136133.1-201ENST00000413694 376 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 RPS7P15-201ENST00000415804 584 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC245052.5-201ENST00000416320 649 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC092634.2-201ENST00000428146 1010 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 RPL31P54-201ENST00000429803 370 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AL357552.1-201ENST00000445254 415 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 PTGES3P5-201ENST00000455109 434 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 ACTG1P13-201ENST00000486987 1043 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC021146.5-201ENST00000503544 545 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 RN7SKP60-201ENST00000516985 239 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AP003973.1-201ENST00000604639 691 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 DPRXP5-201ENST00000604662 539 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC073968.1-201ENST00000618594 637 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC007275.1-201ENST00000621243 671 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS35Q96QK1 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS35Q96QK1 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS35Q96QK1 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS35Q96QK1 AP001350.1-201ENST00000601906 1524 ntBASIC3.44□□□□□ -1.86
VPS35Q96QK1 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS35Q96QK1 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 HMGB1P5-201ENST00000255320 642 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 MIR217-201ENST00000384817 110 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AL133384.1-201ENST00000412744 351 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 BTF3P8-201ENST00000414577 526 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 MRPL42P4-201ENST00000453267 443 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 RN7SL293P-201ENST00000481765 281 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 HMGB1P22-201ENST00000505315 124 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 RNU6-1073P-201ENST00000517182 106 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 DUXAP2-201ENST00000519198 589 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC122134.1-202ENST00000569111 1201 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 MIR3690-201ENST00000580266 75 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC068620.3-201ENST00000602749 560 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC006557.5-201ENST00000603126 811 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AL512427.1-201ENST00000618593 349 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC015967.1-201ENST00000619893 476 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC009318.4-201ENST00000620496 486 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AL357559.1-201ENST00000622228 274 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 AP000720.1-201ENST00000625091 483 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS35Q96QK1 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS35Q96QK1 AC021755.1-201ENST00000559747 1447 ntBASIC3.43□□□□□ -1.86
VPS35Q96QK1 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 SNORA71.3-201ENST00000362582 128 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 RNU4-35P-201ENST00000362588 141 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 RNU6-236P-201ENST00000363886 106 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 MIR670-201ENST00000390142 98 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VPS35Q96QK1 RPL31P1-201ENST00000398116 372 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 MTND4LP20-201ENST00000402379 270 ntBASIC3.42□□□□□ -1.86
VPS35Q96QK1 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS35Q96QK1 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms