Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.42□□□□□ -1.86
CDX1P47902 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CDX1P47902 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CDX1P47902 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.41□□□□□ -1.86
CDX1P47902 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 RNU6-289P-201ENST00000364093 107 ntBASIC3.41□□□□□ -1.86
CDX1P47902 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 AC068538.1-201ENST00000376856 336 ntBASIC3.41□□□□□ -1.86
CDX1P47902 RNU1-63P-201ENST00000383902 164 ntBASIC3.41□□□□□ -1.86
CDX1P47902 OR6C69P-201ENST00000394268 893 ntBASIC3.41□□□□□ -1.86
CDX1P47902 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 RNA5SP129-201ENST00000410276 118 ntBASIC3.41□□□□□ -1.86
CDX1P47902 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 SNRPFP1-201ENST00000414761 252 ntBASIC3.41□□□□□ -1.86
CDX1P47902 OR1AA1P-201ENST00000419597 916 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 AC079780.1-201ENST00000428259 207 ntBASIC3.41□□□□□ -1.86
CDX1P47902 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 ATP5HP2-201ENST00000433885 485 ntBASIC3.41□□□□□ -1.86
CDX1P47902 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 RPL23AP89-201ENST00000439324 255 ntBASIC3.41□□□□□ -1.86
CDX1P47902 DDX39BP2-208ENST00000453923 258 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AL109741.2-201ENST00000455561 343 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AC010618.1-201ENST00000469924 477 ntBASIC3.41□□□□□ -1.86
CDX1P47902 RPS4XP13-201ENST00000483219 789 ntBASIC3.41□□□□□ -1.86
CDX1P47902 RPS3AP6-201ENST00000484430 795 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.41□□□□□ -1.86
CDX1P47902 AC093267.1-201ENST00000489176 961 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AP001086.1-201ENST00000494882 321 ntBASIC3.41□□□□□ -1.86
CDX1P47902 RPL7P47-201ENST00000497299 556 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AC096751.1-202ENST00000502691 1067 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.41□□□□□ -1.86
CDX1P47902 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 AC108064.1-201ENST00000513791 460 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.41□□□□□ -1.86
CDX1P47902 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.41□□□□□ -1.86
CDX1P47902 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.41□□□□□ -1.86
CDX1P47902 IPO5P1-202ENST00000600039 287 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AL133507.1-201ENST00000605269 557 ntBASIC3.41□□□□□ -1.86
CDX1P47902 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.41□□□□□ -1.86
CDX1P47902 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AC140479.6-201ENST00000633535 357 ntBASIC3.41□□□□□ -1.86
CDX1P47902 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.41□□□□□ -1.86
CDX1P47902 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.41□□□□□ -1.86
CDX1P47902 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
CDX1P47902 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CDX1P47902 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.41□□□□□ -1.86
CDX1P47902 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
CDX1P47902 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.4□□□□□ -1.86
CDX1P47902 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CDX1P47902 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
CDX1P47902 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
CDX1P47902 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.4□□□□□ -1.86
CDX1P47902 MIR331-201ENST00000362302 94 ntBASIC3.4□□□□□ -1.87
CDX1P47902 RNU6-50P-201ENST00000362356 103 ntBASIC3.4□□□□□ -1.87
CDX1P47902 RNA5SP307-201ENST00000362863 116 ntBASIC3.4□□□□□ -1.87
CDX1P47902 RNU6-931P-201ENST00000363850 107 ntBASIC3.4□□□□□ -1.87
CDX1P47902 RNA5SP366-201ENST00000365454 123 ntBASIC3.4□□□□□ -1.87
CDX1P47902 RNU6-253P-201ENST00000384730 105 ntBASIC3.4□□□□□ -1.87
CDX1P47902 RNU11-4P-201ENST00000391149 133 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 MIR320C1-201ENST00000408566 88 ntBASIC3.4□□□□□ -1.87
CDX1P47902 PIGPP2-201ENST00000411569 458 ntBASIC3.4□□□□□ -1.87
CDX1P47902 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 EIF1P3-201ENST00000423841 334 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 AL512326.1-201ENST00000443050 721 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC104978.1-201ENST00000449387 391 ntBASIC3.4□□□□□ -1.87
CDX1P47902 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 AC104563.1-201ENST00000476147 376 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC006517.1-201ENST00000480485 328 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC093278.1-201ENST00000494700 600 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.4□□□□□ -1.87
CDX1P47902 AC147055.4-201ENST00000504399 745 ntBASIC3.4□□□□□ -1.87
CDX1P47902 BTF3L4P4-201ENST00000506381 449 ntBASIC3.4□□□□□ -1.87
CDX1P47902 PRELID3BP5-201ENST00000508612 460 ntBASIC3.4□□□□□ -1.87
CDX1P47902 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CDX1P47902 AC024589.1-201ENST00000512207 263 ntBASIC3.4□□□□□ -1.87
CDX1P47902 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.4□□□□□ -1.87
CDX1P47902 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CDX1P47902 COX6CP8-201ENST00000522620 226 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms