Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.76□□□□□ -1.65
COL3A1P02461 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.76□□□□□ -1.65
COL3A1P02461 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.76□□□□□ -1.65
COL3A1P02461 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL3A1P02461 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL3A1P02461 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL3A1P02461 RNU4-35P-201ENST00000362588 141 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 U3.4-201ENST00000363352 213 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 RNU1-33P-201ENST00000364249 162 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 RN7SKP142-201ENST00000411236 328 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 RNU4-74P-201ENST00000411280 161 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 RPS29P4-201ENST00000414733 161 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 OR4K6P-201ENST00000416478 897 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 REREP1Y-201ENST00000422655 198 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 REREP2Y-201ENST00000439103 200 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.75□□□□□ -1.65
COL3A1P02461 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 WASF1P1-201ENST00000447560 1131 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 FTH1P25-201ENST00000447665 469 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC010655.1-201ENST00000449336 292 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 ZNF114P1-201ENST00000453500 292 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 RN7SL93P-201ENST00000463035 293 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 RPS4XP10-201ENST00000465034 731 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 RN7SL293P-201ENST00000481765 281 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL3A1P02461 AC113347.3-201ENST00000509113 148 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 RNU6-405P-201ENST00000516637 110 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL139174.1-201ENST00000531489 886 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL3A1P02461 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.75□□□□□ -1.65
COL3A1P02461 RN7SL622P-201ENST00000585292 275 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 OR4G1P-201ENST00000588632 938 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC006270.3-201ENST00000605967 1036 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL451074.6-201ENST00000608512 729 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC004067.1-201ENST00000608733 700 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC019131.2-201ENST00000609071 870 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC010678.1-201ENST00000614118 713 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 AC063952.1-203ENST00000634410 658 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 OR5AK4P-201ENST00000635912 903 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL035425.3-201ENST00000564206 4996 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL3A1P02461 OR4G1P-202ENST00000641173 1788 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 AL359715.4-201ENST00000606629 1436 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL3A1P02461 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL3A1P02461 MIR200C-201ENST00000384980 68 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 SNORD17-201ENST00000390930 237 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL589994.1-201ENST00000404962 340 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.75□□□□□ -1.65
COL3A1P02461 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 RPL7P4-203ENST00000430239 730 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.75□□□□□ -1.65
COL3A1P02461 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 RPS3AP12-201ENST00000443616 753 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL592437.1-201ENST00000443781 492 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 COX6CP2-201ENST00000444980 225 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 FGF7P6-202ENST00000451282 293 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.75□□□□□ -1.65
COL3A1P02461 AL024509.2-201ENST00000493462 493 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.75□□□□□ -1.65
COL3A1P02461 AC107016.1-201ENST00000550463 337 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL121579.1-201ENST00000555129 305 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.75□□□□□ -1.65
COL3A1P02461 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.75□□□□□ -1.65
COL3A1P02461 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC4.75□□□□□ -1.65
COL3A1P02461 BRDTP1-201ENST00000605735 677 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AL391261.4-201ENST00000616012 481 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 AC084757.4-201ENST00000616350 526 ntBASIC4.75□□□□□ -1.65
COL3A1P02461 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
COL3A1P02461 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL3A1P02461 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
COL3A1P02461 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL3A1P02461 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL3A1P02461 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.74□□□□□ -1.65
COL3A1P02461 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.74□□□□□ -1.65
COL3A1P02461 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL3A1P02461 AC016716.1-201ENST00000265882 708 ntBASIC4.74□□□□□ -1.65
COL3A1P02461 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL3A1P02461 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL3A1P02461 RNU6-1042P-201ENST00000384204 107 ntBASIC4.74□□□□□ -1.65
COL3A1P02461 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.74□□□□□ -1.65
COL3A1P02461 HSPE1P8-201ENST00000406997 288 ntBASIC4.74□□□□□ -1.65
COL3A1P02461 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms