Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.75□□□□□ -1.81
SIX3O95343 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.75□□□□□ -1.81
SIX3O95343 RFPL1S-203ENST00000539579 330 ntBASIC3.75□□□□□ -1.81
SIX3O95343 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.75□□□□□ -1.81
SIX3O95343 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.75□□□□□ -1.81
SIX3O95343 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.75□□□□□ -1.81
SIX3O95343 ZNF415P1-201ENST00000582279 1166 ntBASIC3.75□□□□□ -1.81
SIX3O95343 AC011471.1-201ENST00000585766 187 ntBASIC3.75□□□□□ -1.81
SIX3O95343 BNIP3P26-201ENST00000600827 554 ntBASIC3.75□□□□□ -1.81
SIX3O95343 AC012468.1-201ENST00000604888 430 ntBASIC3.75□□□□□ -1.81
SIX3O95343 RNU4-5P-201ENST00000607255 135 ntBASIC3.75□□□□□ -1.81
SIX3O95343 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.75□□□□□ -1.81
SIX3O95343 AC243773.3-201ENST00000613270 256 ntBASIC3.75□□□□□ -1.81
SIX3O95343 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.75□□□□□ -1.81
SIX3O95343 AC079684.1-201ENST00000621405 437 ntBASIC3.75□□□□□ -1.81
SIX3O95343 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.75□□□□□ -1.81
SIX3O95343 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.75□□□□□ -1.81
SIX3O95343 MIR1322-201ENST00000638013 71 ntBASIC3.75□□□□□ -1.81
SIX3O95343 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SIX3O95343 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SIX3O95343 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SIX3O95343 AC244517.1-201ENST00000606030 2086 ntBASIC3.75□□□□□ -1.81
SIX3O95343 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
SIX3O95343 EXOC5P1-201ENST00000510543 1969 ntBASIC3.74□□□□□ -1.81
SIX3O95343 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 ZNF29P-201ENST00000225587 168 ntBASIC3.74□□□□□ -1.81
SIX3O95343 SNRPEP3-201ENST00000338402 276 ntBASIC3.74□□□□□ -1.81
SIX3O95343 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SIX3O95343 RNU6-50P-201ENST00000362356 103 ntBASIC3.74□□□□□ -1.81
SIX3O95343 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
SIX3O95343 RNU1-13P-201ENST00000384499 162 ntBASIC3.74□□□□□ -1.81
SIX3O95343 RNU6-712P-201ENST00000410558 100 ntBASIC3.74□□□□□ -1.81
SIX3O95343 RNU4-22P-201ENST00000411058 166 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 AC019178.2-201ENST00000423595 505 ntBASIC3.74□□□□□ -1.81
SIX3O95343 RPL7P44-201ENST00000424827 742 ntBASIC3.74□□□□□ -1.81
SIX3O95343 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.74□□□□□ -1.81
SIX3O95343 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.74□□□□□ -1.81
SIX3O95343 MTCO3P11-201ENST00000455103 774 ntBASIC3.74□□□□□ -1.81
SIX3O95343 snoU13.4-201ENST00000458916 104 ntBASIC3.74□□□□□ -1.81
SIX3O95343 RPL21P11-201ENST00000461458 483 ntBASIC3.74□□□□□ -1.81
SIX3O95343 RPS15AP17-201ENST00000470598 390 ntBASIC3.74□□□□□ -1.81
SIX3O95343 RPL7P49-201ENST00000471402 708 ntBASIC3.74□□□□□ -1.81
SIX3O95343 VN1R17P-201ENST00000472048 1090 ntBASIC3.74□□□□□ -1.81
SIX3O95343 ST13P14-201ENST00000474095 734 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.74□□□□□ -1.81
SIX3O95343 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 MTCO2P32-201ENST00000514865 403 ntBASIC3.74□□□□□ -1.81
SIX3O95343 SUMO2P20-201ENST00000520803 283 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SIX3O95343 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 EEF1B2P4-201ENST00000551398 348 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AC141257.3-201ENST00000572906 215 ntBASIC3.74□□□□□ -1.81
SIX3O95343 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.74□□□□□ -1.81
SIX3O95343 AC025946.2-201ENST00000603398 234 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AL137849.1-201ENST00000604767 169 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AC007179.3-201ENST00000604976 235 ntBASIC3.74□□□□□ -1.81
SIX3O95343 AC023158.2-201ENST00000614876 543 ntBASIC3.74□□□□□ -1.81
SIX3O95343 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.74□□□□□ -1.81
SIX3O95343 AC091925.2-201ENST00000625059 256 ntBASIC3.74□□□□□ -1.81
SIX3O95343 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 MIR492-201ENST00000638676 116 ntBASIC3.74□□□□□ -1.81
SIX3O95343 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
SIX3O95343 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
SIX3O95343 AC008725.1-201ENST00000605123 2263 ntBASIC3.74□□□□□ -1.81
SIX3O95343 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.74□□□□□ -1.81
SIX3O95343 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
SIX3O95343 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SIX3O95343 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
SIX3O95343 Y_RNA.465-201ENST00000384293 102 ntBASIC3.73□□□□□ -1.81
SIX3O95343 HSPE1P26-201ENST00000405341 275 ntBASIC3.73□□□□□ -1.81
SIX3O95343 RNA5SP317-201ENST00000410176 116 ntBASIC3.73□□□□□ -1.81
SIX3O95343 RNA5SP311-201ENST00000411290 116 ntBASIC3.73□□□□□ -1.81
SIX3O95343 CYCSP19-201ENST00000411715 316 ntBASIC3.73□□□□□ -1.81
SIX3O95343 MTCO2P8-201ENST00000412213 658 ntBASIC3.73□□□□□ -1.81
SIX3O95343 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.73□□□□□ -1.81
SIX3O95343 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.73□□□□□ -1.81
SIX3O95343 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.73□□□□□ -1.81
SIX3O95343 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.73□□□□□ -1.81
SIX3O95343 PSMA6P3-201ENST00000428242 164 ntBASIC3.73□□□□□ -1.81
SIX3O95343 SNORA71B-202ENST00000439232 272 ntBASIC3.73□□□□□ -1.81
SIX3O95343 AC004854.1-201ENST00000440356 349 ntBASIC3.73□□□□□ -1.81
SIX3O95343 AL645638.1-201ENST00000440519 361 ntBASIC3.73□□□□□ -1.81
SIX3O95343 AC098824.1-201ENST00000453565 980 ntBASIC3.73□□□□□ -1.81
SIX3O95343 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.73□□□□□ -1.81
SIX3O95343 RPS3AP6-201ENST00000484430 795 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms