Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 AL356421.1-201ENST00000403255 413 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 MIR548F1-201ENST00000408667 84 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 FAR2P2-201ENST00000413041 594 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 RPL31P2-201ENST00000413849 377 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 FAR2P4-202ENST00000425399 584 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 OR4F13P-201ENST00000428478 931 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL139415.2-201ENST00000431968 163 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL356276.2-201ENST00000435919 558 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 RPL23AP43-201ENST00000446445 471 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 PSPHP1-201ENST00000450062 261 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC022034.3-201ENST00000471393 478 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 HMGB1P36-201ENST00000487709 576 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 HMGB1P21-201ENST00000502313 581 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC002456.2-201ENST00000509356 380 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC091133.4-201ENST00000511142 308 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 RNU6-714P-201ENST00000516963 103 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 RNU6-430P-201ENST00000517078 107 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AP001781.1-201ENST00000530977 207 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC105233.3-201ENST00000531125 744 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC107918.3-201ENST00000533272 382 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 TPRKBP2-201ENST00000565969 475 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL391840.1-201ENST00000571144 367 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC090615.1-201ENST00000577519 154 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 CKS1BP3-201ENST00000600888 237 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC011468.4-201ENST00000603942 409 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC008745.1-201ENST00000604064 271 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC008966.2-201ENST00000606157 453 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 RNU6-87P-201ENST00000607561 108 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AP002360.3-201ENST00000607673 710 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC090970.3-201ENST00000612566 866 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC090517.2-201ENST00000614966 680 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC131238.1-201ENST00000617135 328 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL158209.2-201ENST00000619266 216 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 PISRT1-201ENST00000626175 531 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AP001273.1-201ENST00000624493 3152 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 AC095050.2-201ENST00000510748 1458 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CTHRC1Q96CG8 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RNU6-343P-201ENST00000364709 104 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RPS20P2-201ENST00000402520 389 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 MRPL42P2-201ENST00000403169 426 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 BTF3P7-201ENST00000407097 488 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RNU2-8P-201ENST00000410727 190 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC022028.1-201ENST00000412054 408 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 PSMA6P3-201ENST00000428242 164 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC008065.1-201ENST00000428525 348 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 UBE2V1P8-201ENST00000437166 265 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 ARPC3P1-201ENST00000437218 533 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RPL23AP93-201ENST00000440847 484 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RPL17P49-201ENST00000443728 411 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RPS20P32-201ENST00000456044 356 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 RN7SL354P-201ENST00000469282 294 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 AC006390.1-201ENST00000508068 283 ntBASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CTHRC1Q96CG8 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms